Gene omics information

Query gene ID	1610418_at
Gene name	hypothetical protein LOC100245385
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1610418_at	BQ798078	hypothetical protein LOC100245385	-	8e-13	At1g20190	ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)	S.X.	H.G.	Please select
0.77	92.3	1618595_at	BQ798258	hypothetical protein LOC100248440	-	5e-1	At4g10950	GDSL-motif lipase/hydrolase family protein	S.X.	H.G.	Please select
0.77	92.3	1615212_at	CF406027	ripening-related protein-like	-	8e+0	At5g64040	PSAN	S.X.	H.G.	Please select
0.67	87.9	1608585_x_at	BQ797013	proline-rich cell wall protein-like	-	7e-7	At3g07910	-	S.X.	H.G.	Please select
0.63	84.3	1621698_at	BQ796130	similar to bHLH transcription factor Upa20	-	8e-2	At3g20510	unknown protein	S.X.	H.G.	Please select
0.61	83.2	1618471_at	BQ792541	hypothetical protein LOC100262881	-	7e-12	At3g28917	MIF2 (MINI ZINC FINGER 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.3	99.7	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
10.6	99.7	GSM287896	Pink soft berry C27 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
10.5	99.7	GSM287892	Pink soft berry C11 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
10.5	99.7	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
10.3	99.6	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
9.6	99.6	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
9.5	99.6	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
9.4	99.6	GSM287881	Green soft berry B10 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
9.2	99.5	GSM287890	Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
9.0	99.5	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	4e-12	71	1619082_at	CF215502	hypothetical protein LOC100244103	-	3e-26	At1g26770	ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)	C.G.	S.X.	Please select
0.04	4e-12	71	1613527_at	CB978490	hypothetical protein LOC100258655	-	3e-15	At1g69530	ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)	C.G.	S.X.	Please select
0.09	2e-8	59	1610849_at	AB104442.1	-	-	5e-26	At1g26770	ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)	C.G.	S.X.	Please select
0.03	2e-8	59	1608074_s_at	CF215793	similar to expansin	-	2e-38	At1g69530	ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)	C.G.	S.X.	Please select
0.05	4e-6	52	1619010_s_at	BQ794765	similar to expansin	-	4e-11	At2g40610	ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8)	C.G.	S.X.	Please select
0.02	5e-2	38	1616490_at	CF513564	-	-	2e-23	At3g22845	emp24/gp25L/p24 protein-related	C.G.	S.X.	Please select
0.02	2e-1	36	1613816_x_at	CF074673	pathogenesis-related protein	-	4e-4	At2g14610	PR1 (PATHOGENESIS-RELATED GENE 1)	C.G.	S.X.	Please select
0.02	2e-1	36	1611490_at	CF074673	pathogenesis-related protein	-	4e-4	At2g14610	PR1 (PATHOGENESIS-RELATED GENE 1)	C.G.	S.X.	Please select
0.02	2e-1	36	1608692_s_at	CF074673	pathogenesis-related protein	-	4e-4	At2g14610	PR1 (PATHOGENESIS-RELATED GENE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	8e-13	75	Arabidopsis thaliana	At1g20190	838608	ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.36	2e-72	274	Glycine max	Gma.9826.1.S1_at	AF516879.1	expansin	-	5e-17	At1g20190	ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)	C.G.	S.X.	Please select
0.03	9e-2	38	Hordeum vulgare	Contig18422_at	Contig18422	-	-	1e-1	At5g42900	unknown protein	C.G.	S.X.	Please select
0.08	6e-9	63	Oryza sativa	Os02g0268600	9630.m01572	-	Expansin family protein	4e-4	At2g39700	ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.43	9e-63	242	Populus trichocarpa	PtpAffx.27616.1.S1_at	DN491669	hypothetical protein	-	4e-5	At1g20190	ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	8e-1	36	Triticum aestivum	Ta.30773.1.S1_at	AY543531.1	expansin EXPA5	-	7e-4	At2g40610	ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8)	C.G.	S.X.	Please select
0.08	3e-10	65	Zea mays	Zm.667.1.A1_at	AF332171.1	alpha-expansin 3	-	1e-7	At1g20190	ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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