CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1610354_s_at

Gene name hypothetical protein LOC100244095

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1610354_s_at CF511640 hypothetical protein LOC100244095 - 1e-50 At3g48930 EMB1080 (embryo defective 1080) S.X. H.G.
0.67 87.9 1607660_at CA812263 similar to ribosomal protein L17 - 6e-80 At1g04480 60S ribosomal protein L23 (RPL23A) S.X. H.G.
0.67 87.9 1614350_at CF517395 hypothetical protein LOC100242146 - 4e-72 At4g00100 ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) S.X. H.G.
0.60 81.9 1613237_at CF371897 hypothetical protein LOC100254540 - 1e-19 At3g04230 40S ribosomal protein S16 (RPS16B) S.X. H.G.
0.55 77.3 1610630_at CB002854 hypothetical protein LOC100260347 - 3e-14 At3g56340 40S ribosomal protein S26 (RPS26C) S.X. H.G.
0.50 72.7 1621022_at BQ794425 hypothetical protein LOC100255295 - 7e-43 At3g02080 40S ribosomal protein S19 (RPS19A) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.4 91.3 GSM436394 V. riparia (VR, PI588259) LD, 15h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436416 V. riparia (VR, PI588259) SD, 13h 7 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436373 Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436374 Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436360 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436412 V. riparia (VR, PI588259) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9 87.2 GSM287869 Green hard berry C3 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.78 0 1189 1609509_at CF206236.1 - - 1e-50 At3g48930 EMB1080 (embryo defective 1080) C.G. S.X.
0.02 8e-3 40 1616057_s_at CF405703 hypothetical protein LOC100248302 - 1e-11 At4g01120 GBF2 (G-BOX BINDING FACTOR 2) C.G. S.X.
0.03 1e-1 36 1620239_at CF512309 - - 6e+0 At4g02530 chloroplast thylakoid lumen protein C.G. S.X.
0.02 2e+0 32 1622465_s_at BQ797465 hypothetical protein LOC100263186 - 3e-14 At3g16570 RALFL23 (ralf-like 23) C.G. S.X.
0.02 2e+0 32 1619597_at BQ797465 hypothetical protein LOC100263186 - 3e-14 At3g16570 RALFL23 (ralf-like 23) C.G. S.X.
0.02 2e+0 32 1619121_at CF415615 hypothetical protein LOC100246791 - 2e-18 At5g59690 histone H4 C.G. S.X.
0.02 2e+0 32 1614285_at CF205247.1 hypothetical LOC100242120 - 2e-3 At5g24960 CYP71A14 C.G. S.X.
0.03 2e+0 32 1611497_at CF209824 hypothetical protein LOC100257576 - 1e+0 At5g23420 HMGB6 C.G. S.X.
0.02 2e+0 32 1610722_at BQ797980 hypothetical protein LOC100255644 - 7e-2 At1g58122 CPuORF45 (Conserved peptide upstream open reading frame 45) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.47 1e-50 200 Arabidopsis thaliana At3g48930 824054 EMB1080 (embryo defective 1080) F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, membrane;MOBAFP - - - C.G. S.X.
0.47 1e-45 184 Glycine max Gma.13177.2.S1_a_at AW507568 - - 5e-27 At3g48930 EMB1080 (embryo defective 1080) C.G. S.X.
0.26 2e-29 129 Hordeum vulgare Contig14638_at Contig14638 - - 4e-35 At4g30800 40S ribosomal protein S11 (RPS11B) C.G. S.X.
0.40 3e-40 167 Oryza sativa Os04g0502300 AK120520.1 - 40S ribosomal protein S11 6e-59 At3g48930 EMB1080 (embryo defective 1080) C.G. S.X.
0.44 1e-75 284 Populus trichocarpa Ptp.5621.1.S1_s_at CV231534 hypothetical protein - 2e-89 At3g48930 EMB1080 (embryo defective 1080) C.G. S.X.
0.42 2e-31 137 Triticum aestivum TaAffx.112443.2.S1_at CA627380 - - 4e-28 At3g48930 EMB1080 (embryo defective 1080) C.G. S.X.
0.39 6e-60 230 Zea mays Zm.2157.7.S1_at CF019402 ribosomal protein S11 - 1e-38 At4g30800 40S ribosomal protein S11 (RPS11B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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