Gene omics information

Query gene ID	1610277_at
Gene name	hypothetical protein LOC100257821
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	90.8	1610277_at	CF208016	hypothetical protein LOC100257821	-	2e-1	At1g17710	phosphatase	S.X.	H.G.	Please select
0.53	75.2	1611084_at	CA816784	-	-	6e+0	At3g26690	ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13)	S.X.	H.G.	Please select
0.44	64.1	1610423_s_at	CB977222	hypothetical protein LOC100250124	-	5e-6	At2g02960	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.44	64.1	1612201_at	CF404051	hypothetical protein LOC100266189	-	7e-5	At4g32551	LUG (LEUNIG)	S.X.	H.G.	Please select
0.42	60.1	1619134_at	CB971759	-	-	2e+0	At5g53720	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.40	57.7	1617471_at	BQ796087	hypothetical protein LOC100266752	-	1e+0	Atmg00850	-	S.X.	H.G.	Please select
0.40	57.7	1611698_at	CA812037	hypothetical protein LOC100263780	-	2e+0	At5g65360	histone H3	S.X.	H.G.	Please select
0.32	43.1	1615091_at	CD801426	hypothetical protein LOC100242289	-	2e-2	At1g13770	-	S.X.	H.G.	Please select
0.32	43.1	1621862_at	CF510931	hypothetical protein LOC100267900	-	2e+0	At1g15930	40S ribosomal protein S12 (RPS12A)	S.X.	H.G.	Please select
0.30	39.4	1608374_at	CF214105	-	-	3e-1	At4g03153	kinase interacting family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.2	98.2	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
5.0	98.0	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
4.9	97.9	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
3.4	95.5	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
3.1	94.6	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
3.0	94.2	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
2.6	92.5	GSM147733	Vitis aestivalis 'Norton ' mock inoculateds at 4 h post inoculation	62
2.5	91.9	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.5	91.9	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	7e-2	36	1617873_at	AY427106.1	-	-	1e+0	At4g40010	SNRK2.7 (SNF1-RELATED PROTEIN KINASE 2.7)	C.G.	S.X.	Please select
0.04	7e-2	36	1614046_at	AY427106.1	hypothetical protein LOC100249421	-	1e+0	At4g40010	SNRK2.7 (SNF1-RELATED PROTEIN KINASE 2.7)	C.G.	S.X.	Please select
0.02	7e-2	36	1613085_at	CB969437	hypothetical protein LOC100262213	-	3e-34	At3g45780	PHOT1 (PHOTOTROPIN 1)	C.G.	S.X.	Please select
0.04	7e-2	36	1609650_at	CF517204	-	-	1e+0	At2g18970	unknown protein	C.G.	S.X.	Please select
0.04	7e-2	36	1608371_at	CB348262	-	-	1e+0	At5g03790	HB51	C.G.	S.X.	Please select
0.05	3e-1	34	1620393_at	CB970191	-	-	2e+1	At5g66450	phosphatidic acid phosphatase-related / PAP2-related	C.G.	S.X.	Please select
0.04	3e-1	34	1611674_at	BQ792639	hypothetical protein LOC100242654	-	4e+0	At5g06790	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	1622364_at	CF606509	-	-	2e+0	At5g62750	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	1621884_at	CB007990	-	-	2e+0	At4g32690	GLB3	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-1	36	Arabidopsis thaliana	At1g17710	838347	phosphatase	F:phosphatase activity;P:metabolic process;C:unknown;MPOBF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.88625.1.A1_at	CD405589	-	-	1e+1	At5g27860	unknown protein	C.G.	S.X.	Please select
0.04	1e-1	36	Hordeum vulgare	HVSMEm0022K13r2_at	HVSMEm0022K13r2	-	-	1e+0	At5g35100	peptidyl-prolyl cis-trans isomerase	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	Os04g0293600	AK063003.1	-	Hypothetical protein	4e+0	At5g43620	S-locus protein-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	2e-5	50	Populus trichocarpa	PtpAffx.206728.1.S1_at	pmrna13355	glycosyl transferase	-	2e+0	At3g27850	RPL12-C (ribosomal protein l12-c)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	32	Triticum aestivum	TaAffx.122439.1.A1_at	BE516110	-	-	1e-2	At4g18205	-	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	Zm.4925.1.A1_at	BQ538657	hypothetical protein LOC100193975	-	1e+0	At5g08565	positive transcription elongation factor/ zinc ion binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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