Gene omics information

Query gene ID	1610254_at
Gene name	hypothetical protein LOC100266073
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.42	60.1	1610254_at	CF517943	hypothetical protein LOC100266073	-	2e-5	At4g16530	unknown protein	S.X.	H.G.	Please select
0.59	80.6	1622000_s_at	CF604800	hypothetical protein LOC100242169	-	1e+0	At3g27329	-	S.X.	H.G.	Please select
0.48	68.8	1612066_at	CF607715	beclin 1 protein	-	5e-48	At3g61710	autophagy protein Apg6 family	S.X.	H.G.	Please select
0.43	61.5	1608277_at	CA816391	hypothetical protein LOC100249980	-	3e-75	At4g12230	esterase/lipase/thioesterase family protein	S.X.	H.G.	Please select
0.38	53.6	1611078_a_at	CF518728	hypothetical protein LOC100260925	-	1e-7	At1g32230	RCD1 (RADICAL-INDUCED CELL DEATH1)	S.X.	H.G.	Please select
0.38	53.6	1611994_a_at	CF214487	hypothetical protein LOC100260925	-	7e-8	At1g32230	RCD1 (RADICAL-INDUCED CELL DEATH1)	S.X.	H.G.	Please select
0.34	46.8	1617936_at	BQ797736	similar to 26S proteasome subunit RPN5b	-	3e-23	At5g64760	RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)	S.X.	H.G.	Please select
0.28	37.7	1622567_at	CF516028	hypothetical protein LOC100266603	-	2e-20	At5g27490	integral membrane Yip1 family protein	S.X.	H.G.	Please select
0.26	32.0	1611784_at	CB971421	hypothetical protein LOC100256712	-	2e-37	At3g07300	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.3	95.2	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM287886	Green soft berry C22 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.0	94.2	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.0	94.2	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.4	91.3	GSM287871	Green hard berry C4 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	9e-79	291	1617003_at	CF205278.1	-	-	2e-2	At1g69760	unknown protein	C.G.	S.X.	Please select
0.12	2e-33	141	1607142_s_at	CB349118	-	-	1e+0	At5g03130	unknown protein	C.G.	S.X.	Please select
0.05	2e-9	61	1609629_at	CF606022	hypothetical protein LOC100250476	-	3e-17	At5g13330	Rap2.6L (related to AP2 6L)	C.G.	S.X.	Please select
0.04	6e-9	59	1616984_at	CD798634	hypothetical protein LOC100258748	-	1e-7	At2g36900	MEMB11 (MEMBRIN 11)	C.G.	S.X.	Please select
0.03	6e-9	59	1613318_at	BQ799524	sucrose responsive element binding protein	-	2e-10	At4g37260	MYB73 (MYB DOMAIN PROTEIN 73)	C.G.	S.X.	Please select
0.04	6e-9	59	1611897_s_at	CB347033	hypothetical protein LOC100243978	-	1e-47	At4g34050	caffeoyl-CoA 3-O-methyltransferase, putative	C.G.	S.X.	Please select
0.05	6e-9	59	1609555_at	CD719835	hypothetical protein LOC100261123	-	2e-30	At5g08790	ATAF2	C.G.	S.X.	Please select
0.05	6e-9	59	1608950_at	CF606755	hypothetical protein LOC100251050	-	1e-6	At5g19200	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.05	2e-8	57	1616772_at	CD799675	hypothetical protein LOC100244510	-	1e-6	At1g20670	DNA-binding bromodomain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-5	50	Arabidopsis thaliana	At4g16530	827352	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.24	7e-15	81	Glycine max	GmaAffx.46065.1.S1_at	BM178754	-	-	1e-3	At4g16530	unknown protein	C.G.	S.X.	Please select
0.04	5e-1	34	Hordeum vulgare	HVSMEi0002K06f_x_at	HVSMEi0002K06f	-	-	3e+0	At2g40995	-	C.G.	S.X.	Please select
0.04	6e-1	36	Oryza sativa	OsAffx.26560.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	2e-6	54	Populus trichocarpa	PtpAffx.60689.1.S1_at	CK094371	-	-	1e-7	At4g16530	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-4	46	Triticum aestivum	Ta.11263.1.S1_at	BQ169728	-	-	4e+0	At4g05018	unknown protein	C.G.	S.X.	Please select
0.04	1e-1	36	Zea mays	Zm.5143.1.A1_at	AY107731.1	hypothetical protein LOC100276623	-	1e-1	At1g74730	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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