Gene omics information

Query gene ID	1610071_at
Gene name	hypothetical protein LOC100253046
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1610071_at	BQ797708	hypothetical protein LOC100253046	-	2e-4	At1g65680	ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)	S.X.	H.G.	Please select
0.67	87.9	1611457_at	CD711959	-	-	1e+0	At2g01275	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.60	81.9	1617756_at	CB981493	hypothetical protein LOC100253194	-	2e+1	At5g57560	TCH4 (Touch 4)	S.X.	H.G.	Please select
0.60	81.9	1620959_s_at	CB915151	myb-relared transcription factor VvMYBA2	-	4e+0	At5g19855	unknown protein	S.X.	H.G.	Please select
0.55	77.3	1621352_at	BQ794457	hypothetical protein LOC100250600	-	3e-1	At1g74930	ORA47	S.X.	H.G.	Please select
0.40	57.7	1609366_at	CD012590	-	-	1e+0	At5g26170	WRKY50	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.3	100.0	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
19.3	99.9	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
16.1	99.9	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
15.9	99.9	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
15.8	99.9	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
14.8	99.9	GSM287892	Pink soft berry C11 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
14.3	99.9	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
14.2	99.9	GSM287896	Pink soft berry C27 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
14.1	99.8	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
12.8	99.8	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-2	38	1619082_at	CF215502	hypothetical protein LOC100244103	-	3e-26	At1g26770	ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)	C.G.	S.X.	Please select
0.01	7e-1	34	1621542_at	BQ792328	hypothetical protein LOC100249322	-	1e-18	At2g28840	ankyrin repeat family protein	C.G.	S.X.	Please select
0.02	7e-1	34	1613030_at	CF512983	-	-	1e+0	At2g45450	ZPR1 (LITTLE ZIPPER 1)	C.G.	S.X.	Please select
0.02	3e+0	32	1622292_at	CF403386	hypothetical protein LOC100263206	-	1e+0	At5g43380	TOPP6	C.G.	S.X.	Please select
0.02	3e+0	32	1622453_at	CB002354	-	-	1e-3	At2g13690	PRLI-interacting factor, putative	C.G.	S.X.	Please select
0.02	3e+0	32	1621068_at	CK136972.1	hypothetical protein LOC100266026	-	2e-5	At1g06550	enoyl-CoA hydratase/isomerase family protein	C.G.	S.X.	Please select
0.02	3e+0	32	1620988_at	CD799819	hypothetical protein LOC100251707	-	4e-50	At4g35410	clathrin adaptor complex small chain family protein	C.G.	S.X.	Please select
0.02	3e+0	32	1618629_at	CB973528	hypothetical protein LOC100260878	-	1e-3	At2g13690	PRLI-interacting factor, putative	C.G.	S.X.	Please select
0.02	3e+0	32	1617286_at	CK136972.1	-	-	2e-5	At1g06550	enoyl-CoA hydratase/isomerase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	2e-4	48	Arabidopsis thaliana	At1g65680	842879	ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)	member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	2e-7	57	Glycine max	Gma.33.1.S1_at	U03860.1	cytokinin induced message	-	1e-4	At1g65680	ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)	C.G.	S.X.	Please select
0.02	3e-1	36	Hordeum vulgare	Contig18874_at	Contig18874	-	-	2e+0	At3g15040	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	34	Oryza sativa	Os02g0658600	9630.m04262	-	Beta-expansin	2e+0	At5g50660	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.22	2e-23	111	Populus trichocarpa	PtpAffx.981.1.S1_at	CV258295	hypothetical protein	-	2e-3	At1g65680	ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	6e-1	36	Triticum aestivum	TaAffx.114173.1.S1_at	CA597386	-	-	4e+0	At2g20750	ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1)	C.G.	S.X.	Please select
0.03	7e-2	38	Zea mays	Zm.7116.1.A1_at	BI142341	beta-expansin 4	-	7e-1	At1g65680	ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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