Gene omics information

Query gene ID	1610039_s_at
Gene name	similar to NADH-plastoquinone oxidoreductase subunit K
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1610039_s_at	CA817529	similar to NADH-plastoquinone oxidoreductase subunit K	-	0	Atcg00480	-	S.X.	H.G.	Please select
0.77	92.3	1616688_s_at	CB342776	-	-	0	Atcg01050	-	S.X.	H.G.	Please select
0.67	87.9	1613588_at	CA818655	-	-	6e-175	Atcg00730	-	S.X.	H.G.	Please select
0.60	81.9	1608138_s_at	CB342671	-	-	0	Atcg00120	-	S.X.	H.G.	Please select
0.50	72.7	1614231_s_at	CB970079	hypothetical protein LOC100245250	-	3e-5	At3g15360	TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4)	S.X.	H.G.	Please select
0.40	57.7	1616847_s_at	CA816751	hypothetical protein LOC100267942	-	2e-12	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.0	94.2	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.8	93.4	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3	90.7	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	0	6776	1620265_at	BQ793093	-	-	0	Atcg00480	-	C.G.	S.X.	Please select
0.17	0	916	1622862_at	CB004075	-	-	1e-38	Atcg00440	-	C.G.	S.X.	Please select
0.17	0	916	1612005_s_at	CB004075	-	-	1e-38	Atcg00440	-	C.G.	S.X.	Please select
0.11	0	882	1618379_s_at	CB343512	-	-	1e+0	At3g49115	unknown protein	C.G.	S.X.	Please select
0.10	0	755	1612889_s_at	CF512929	-	-	7e-1	At1g73490	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.02	1e-15	85	1612184_at	CD010331	-	-	1e+0	At4g19700	RING	C.G.	S.X.	Please select
0.02	1e-15	85	1608413_at	CD010331	-	-	1e+0	At4g19700	RING	C.G.	S.X.	Please select
0.01	8e-2	40	1619412_at	CB342923	-	-	2e+0	At1g32280	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.01	3e-1	38	1620909_at	CB979931	-	-	1e+0	At3g16240	DELTA-TIP	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	0	1923	Arabidopsis thaliana	Atcg00480	-	-	chloroplast-encoded gene for beta subunit of ATP synthase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.24	0	1723	Glycine max	Gma.11940.2.S1_at	BE440563	F1 beta subunit of ATP synthase mRNA, partial cds; nuclear gene for mitochondrial product	-	0	Atcg00480	-	C.G.	S.X.	Please select
0.10	2e-111	404	Hordeum vulgare	HVSMEc0015H24f_at	HVSMEc0015H24f	-	-	1e-86	Atcg00430	-	C.G.	S.X.	Please select
Os06g0598600	0.28	0e+0	Oryza sativa	Os05g0427700	-	-	-	0			C.G.	S.X.	Please select
0.23	0	841	Populus trichocarpa	PtpAffx.44980.1.S1_at	AJ769365	-	-	0	Atcg00430	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	1e-111	406	Triticum aestivum	TaAffx.128473.2.A1_x_at	CA681227	-	-	2e-115	Atcg00480	-	C.G.	S.X.	Please select
0.27	0	1511	Zea mays	ZmAffx.1462.1.S1_at	11990232-29	-	-	0	Atcg00480	-	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage