CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1609986_at

Gene name hypothetical protein LOC100261396

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.9 1609986_at CB349859 hypothetical protein LOC100261396 - 6e-2 At4g05130 equilibrative nucleoside transporter, putative (ENT4) S.X. H.G.
0.44 64.1 1618478_at CF515277 hypothetical protein LOC100259390 - 4e-3 At2g34850 MEE25 (maternal effect embryo arrest 25) S.X. H.G.
0.40 57.7 1609253_at CB974058 - - 4e+0 At3g30160 unknown protein S.X. H.G.
0.27 34.0 1622456_at CF609276 hypothetical protein LOC100245907 /// hypothetical protein LOC100265993 - 2e-1 At5g65870 ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR) S.X. H.G.
0.25 30.5 1610013_s_at CF213272 hypothetical protein LOC100259835 - 6e-6 At2g26530 AR781 S.X. H.G.
0.25 30.5 1612186_at CD800937 hypothetical protein LOC100241494 - 1e+1 At5g18250 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.5 99.9 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
10.6 99.7 GSM299456 C_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
9.1 99.5 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.7 99.5 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.5 99.4 GSM299460 D_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.7 99.3 GSM299458 D_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.6 97.6 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.2 97.1 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
4.2 97.1 GSM147716 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 45
4.0 96.7 GSM299455 C_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e-2 36 1622334_at CD713078 - - 3e-1 At1g27360 squamosa promoter-binding protein-like 11 (SPL11) C.G. S.X.
0.03 7e-2 36 1609704_at CD713078 hypothetical protein LOC100263192 - 3e-1 At1g27360 squamosa promoter-binding protein-like 11 (SPL11) C.G. S.X.
0.03 3e-1 34 1618063_at CB980274 hypothetical protein LOC100259885 - 7e-6 At4g16830 nuclear RNA-binding protein (RGGA) C.G. S.X.
0.03 1e+0 32 1622318_at CF516494 similar to putative anti-virus transcriptional factor - 5e-3 At3g48070 protein binding / zinc ion binding C.G. S.X.
0.02 1e+0 32 1609497_at CD801719 hypothetical protein LOC100267696 - 6e-1 At1g06460 ACD32.1 (ALPHA-CRYSTALLIN DOMAIN 32.1) C.G. S.X.
0.03 5e+0 30 1621041_at BQ794656 hypothetical protein LOC100251391 - 2e-5 At4g30200 - C.G. S.X.
0.01 5e+0 30 1619641_at CB339547 - - 7e-98 Atcg00040 - C.G. S.X.
0.01 5e+0 30 1618476_s_at CF214733 - - 7e-98 Atcg00040 - C.G. S.X.
0.03 5e+0 30 1615444_at CF609872 hypothetical protein LOC100249127 - 4e+0 At5g37480 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e-2 38 Arabidopsis thaliana At4g05130 825858 equilibrative nucleoside transporter, putative (ENT4) F:nucleoside transmembrane transporter activity;P:transport;C:membrane;MOPF - - - C.G. S.X.
0.21 2e-5 50 Glycine max GmaAffx.36878.1.S1_at BI972157 - - 7e-4 At4g05130 equilibrative nucleoside transporter, putative (ENT4) C.G. S.X.
0.04 2e+0 32 Hordeum vulgare Contig24673_at Contig24673 - - 4e-2 At1g49400 emb1129 (embryo defective 1129) C.G. S.X.
0.04 1e-7 57 Oryza sativa Os07g0557200 AK101098.1 - Delayed-early response protein/equilibrativenucleoside transporter family protein 8e-5 At4g05120 FUR1 (FUDR RESISTANT 1) C.G. S.X.
0.24 3e-29 129 Populus trichocarpa PtpAffx.212508.1.S1_at pmrna24496 equilibrative nucleoside transporter - 4e-5 At3g09990 equilibrative nucleoside transporter, putative (ENT2) C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.92729.1.A1_at BJ250584 - - 3e-1 At2g32160 - C.G. S.X.
0.03 7e+0 30 Zea mays Zm.9633.1.S1_at BM380839 - - 2e+1 At5g55507 hydroxyproline-rich glycoprotein family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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