Gene omics information

Query gene ID	1609973_at
Gene name	hypothetical protein LOC100244406
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	81.9	1609973_at	CD801577	hypothetical protein LOC100244406	-	7e+0	At3g50695	unknown protein	S.X.	H.G.	Please select
0.73	90.8	1607601_at	CF209956	hypothetical protein LOC100244746	-	2e-15	At1g09400	12-oxophytodienoate reductase, putative	S.X.	H.G.	Please select
0.57	79.8	1618892_at	CF200898.1	-	-	2e-9	At3g23800	SBP3 (selenium-binding protein 3)	S.X.	H.G.	Please select
0.46	66.5	1620851_at	CF206747.1	-	-	4e-1	At2g37210	-	S.X.	H.G.	Please select
0.40	57.7	1620010_at	CA813625	-	-	3e+0	At5g40700	unknown protein	S.X.	H.G.	Please select
0.17	18.2	1608230_at	CB978302	-	-	4e+0	At1g13580	LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)	S.X.	H.G.	Please select
0.17	18.2	1612379_at	CF414853	hypothetical protein LOC100265626	-	2e-1	At2g34123	-	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.0	99.5	GSM147719	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	48
8.5	99.4	GSM147718	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	47
8.4	99.4	GSM147731	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	60
7.3	99.2	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
7.3	99.2	GSM147712	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	41
7.0	99.1	GSM147736	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	65
7.0	99.1	GSM147730	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	59
7.0	99.1	GSM147713	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	42
6.9	99.1	GSM147724	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	53
6.5	98.9	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-1	34	1613880_at	CF203036.1	-	-	3e-4	At4g28050	TET7 (TETRASPANIN7)	C.G.	S.X.	Please select
0.02	5e-1	34	1611078_a_at	CF518728	hypothetical protein LOC100260925	-	1e-7	At1g32230	RCD1 (RADICAL-INDUCED CELL DEATH1)	C.G.	S.X.	Please select
0.02	5e-1	34	1608186_at	CB007992	hypothetical protein LOC100243286	-	7e-4	At4g30430	TET9 (TETRASPANIN9)	C.G.	S.X.	Please select
0.02	5e-1	34	1606436_s_at	CB007992	hypothetical protein LOC100243286	-	7e-4	At4g30430	TET9 (TETRASPANIN9)	C.G.	S.X.	Please select
0.02	2e+0	32	1618870_at	CD798613	-	-	1e+0	At4g12790	ATP-binding family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1615488_at	CB346209	-	-	2e+0	At5g52605	-	C.G.	S.X.	Please select
0.03	2e+0	32	1615501_at	CF517672	-	-	4e+0	At3g11660	NHL1	C.G.	S.X.	Please select
0.07	2e+0	32	1615396_at	CF415197	hypothetical protein LOC100262601	-	4e+0	At5g61310	cytochrome c oxidase subunit Vc, putative / COX5C, putative	C.G.	S.X.	Please select
0.02	2e+0	32	1613274_at	CD800003	hypothetical protein LOC100262768	-	1e+0	At5g28180	kelch repeat-containing F-box family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e+0	32	Arabidopsis thaliana	At3g50695	6240512	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-2	42	Glycine max	GmaAffx.27787.1.A1_at	BG789758	-	-	1e+0	At4g21560	VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1)	C.G.	S.X.	Please select
0.02	8e-1	34	Hordeum vulgare	Contig7662_at	Contig7662	-	-	5e+0	At5g59780	MYB59 (MYB DOMAIN PROTEIN 59)	C.G.	S.X.	Please select
Os03g0627450	0	0.02	Oryza sativa	Os03g0627400	9631.m04130	-	-	1e-1	At1g77640	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.12	7e-10	65	Populus trichocarpa	PtpAffx.213817.1.S1_at	pmrna26967	white-brown-complex ABC transporter family	-	6e-2	At5g63000	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	7e+0	32	Triticum aestivum	Ta.9930.2.S1_x_at	BJ234934	-	-	7e-1	Atmg00720	-	C.G.	S.X.	Please select
0.02	1e+1	30	Zea mays	Zm.5097.1.A1_at	BM379001	PAC	-	9e-18	At2g48120	PAC (PALE CRESS)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage