CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1609942_at

Gene name hypothetical protein LOC100262467

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1609942_at CF210968 hypothetical protein LOC100262467 - 5e+0 At5g67580 TRB2 S.X. H.G.
0.71 89.5 1615411_s_at BQ799375 hypothetical protein LOC100266324 - 3e-4 At1g43130 LCV2 (LIKE COV 2) S.X. H.G.
0.67 87.9 1613621_s_at CD721086 hypothetical protein LOC100246359 - 3e-1 At5g58412 - S.X. H.G.
0.67 87.9 1606807_at BQ794559 hypothetical protein LOC100264697 - 7e-21 At5g11710 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related S.X. H.G.
0.50 72.7 1611974_at CF208396 hypothetical protein LOC100258926 - 9e-27 At2g15430 NRPB3 S.X. H.G.
0.48 68.8 1608155_at CF210980 hypothetical protein LOC100252195 - 1e-31 At4g34460 AGB1 (GTP BINDING PROTEIN BETA 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.7 96.2 GSM436388 V. riparia (VR, PI588259) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM436403 V. riparia (VR, PI588259) LD, 15h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436392 V. riparia (VR, PI588259) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436362 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436423 V. riparia (VR, PI588259) SD, 13h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436391 V. riparia (VR, PI588259) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436383 Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.37 4e-90 329 1614957_at CD716854 - - 1e+1 At3g04735 RALFL21 (RALF-LIKE 21) C.G. S.X.
0.37 4e-90 329 1611187_at CD716854 - - 1e+1 At3g04735 RALFL21 (RALF-LIKE 21) C.G. S.X.
0.03 4e-1 34 1622567_at CF516028 hypothetical protein LOC100266603 - 2e-20 At5g27490 integral membrane Yip1 family protein C.G. S.X.
0.02 2e+0 32 1621290_at BM436914 - - 2e-2 At4g25990 CIL C.G. S.X.
0.02 2e+0 32 1617995_a_at CF512103 hypothetical protein LOC100242505 /// hypothetical protein LOC100262532 - 1e-13 At3g11710 ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1) C.G. S.X.
0.02 2e+0 32 1617517_at CF606810 hypothetical protein LOC100265819 - 2e-2 At4g25990 CIL C.G. S.X.
0.02 2e+0 32 1611170_at CB834329 - - 1e+0 At1g68120 BPC3 (BASIC PENTACYSTEINE 3) C.G. S.X.
0.02 2e+0 32 1608708_at CF211873 hypothetical protein LOC100255983 - 2e-9 At4g29680 type I phosphodiesterase/nucleotide pyrophosphatase family protein C.G. S.X.
0.02 2e+0 32 1607355_at CB834329 - - 1e+0 At1g68120 BPC3 (BASIC PENTACYSTEINE 3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e+0 32 Arabidopsis thaliana At5g67580 836894 TRB2 Encodes a telomeric DNA binding protein. In vitro, the protein preferentially binds double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. - - - C.G. S.X.
0.11 5e-4 46 Glycine max Gma.6417.1.S1_at BQ611795 - - 7e-2 At3g57650 LPAT2 C.G. S.X.
0.03 2e+0 32 Hordeum vulgare HVSMEm0015A09r2_x_at HVSMEm0015A09r2 - - 3e+0 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
0.03 3e+0 34 Oryza sativa Os.52591.1.S1_at - - - 0 C.G. S.X.
0.14 3e-5 50 Populus trichocarpa Ptp.1880.1.A1_at CV283899 hypothetical protein - 5e-14 At3g57650 LPAT2 C.G. S.X.
0.05 1e+0 34 Triticum aestivum TaAffx.8194.1.S1_at CA632105 - - 7e-1 At5g64667 IDL2 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 2) C.G. S.X.
0.03 9e+0 30 Zea mays ZmAffx.331.1.A1_at AI670513 - - 6e-1 At4g26950 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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