CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1609930_at

Gene name hypothetical LOC100243959

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1609930_at CB340826 hypothetical LOC100243959 - 3e-24 At5g11260 HY5 (ELONGATED HYPOCOTYL 5) S.X. H.G.
0.47 67.7 1622268_at CF372312 - - 9e-16 At4g11110 SPA2 (SPA1-RELATED 2) S.X. H.G.
0.20 22.4 1621150_at CF516004 hypothetical protein LOC100248338 - 1e-8 At5g39040 ATTAP2 S.X. H.G.
0.09 9.4 1607289_at CD802115 hypothetical protein LOC100243734 - 9e-2 At3g29020 MYB110 (myb domain protein 110) S.X. H.G.
0.03 4.2 1619250_at CF511091 - - 1e+0 At3g55280 RPL23AB (RIBOSOMAL PROTEIN L23AB) S.X. H.G.
0.02 3.2 1609776_at CB979308 hypothetical protein LOC100252635 - 1e-19 At1g73875 endonuclease/exonuclease/phosphatase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.5 98.9 GSM436351 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
5.4 98.3 GSM436350 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
5.3 98.2 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.4 97.3 GSM147725 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 54
4.4 97.3 GSM322364 genotype: Chardonnay - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.9 96.6 GSM147724 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 53
3.5 95.7 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.4 95.5 GSM436378 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72
3.1 94.6 GSM436367 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-2 38 1622805_at CD801410 hypothetical protein LOC100262292 - 9e-5 At1g28280 VQ motif-containing protein C.G. S.X.
0.03 4e-2 38 1612156_at CA818824 - - 1e-28 At2g01770 VIT1 (vacuolar iron transporter 1) C.G. S.X.
0.03 1e-1 36 1619817_at CD005811 - - 3e-4 At4g13615 four F5 protein-related / 4F5 protein-related C.G. S.X.
0.02 1e-1 36 1619657_at CD719074 - - 1e-1 At1g53650 CID8 (CTC-INTERACTING DOMAIN 8) C.G. S.X.
0.03 1e-1 36 1618584_at CD720161 - - 3e+0 At4g35480 RHA3B C.G. S.X.
0.03 1e-1 36 1616049_at CD005811 - - 3e-4 At4g13615 four F5 protein-related / 4F5 protein-related C.G. S.X.
0.02 1e-1 36 1615794_at CF513113 - - 2e+0 At2g05840 PAA2 (20S PROTEASOME SUBUNIT PAA2) C.G. S.X.
0.03 1e-1 36 1614774_at CF605029 hypothetical protein LOC100245929 - 3e+0 At4g35480 RHA3B C.G. S.X.
0.02 1e-1 36 1609841_at CD719074 - - 1e-1 At1g53650 CID8 (CTC-INTERACTING DOMAIN 8) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.34 3e-24 113 Arabidopsis thaliana At5g11260 830996 HY5 (ELONGATED HYPOCOTYL 5) Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression. - - - C.G. S.X.
0.21 9e-22 105 Glycine max Gma.8537.1.S1_at L28004.1 TGACG-motif-binding factor - 2e-19 At5g11260 HY5 (ELONGATED HYPOCOTYL 5) C.G. S.X.
0.18 1e-21 103 Hordeum vulgare Contig15369_at Contig15369 - - 1e-4 At3g17609 HYH (HY5-HOMOLOG) C.G. S.X.
0.17 3e-25 117 Oryza sativa OsAffx.2569.1.S1_s_at - - - 0 C.G. S.X.
0.31 8e-53 208 Populus trichocarpa PtpAffx.79743.1.S1_at CK095368 hypothetical protein - 4e-38 At5g11260 HY5 (ELONGATED HYPOCOTYL 5) C.G. S.X.
0.03 8e+0 32 Triticum aestivum Ta.3734.1.A1_at CD920422 - - 2e+0 At3g42155 catalytic/ hydrolase, hydrolyzing O-glycosyl compounds C.G. S.X.
0.03 1e+1 30 Zea mays ZmAffx.143.1.S1_at AI667791 - - 5e+0 At5g23480 DNA binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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