Gene omics information

Query gene ID	1609907_x_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1609907_x_at	CF201896.1	-	-	8e+0	At5g50345	-	S.X.	H.G.	Please select
0.77	92.3	1622826_x_at	CF202930.1	-	-	9e+0	At2g04845	GCN5-related N-acetyltransferase (GNAT) family protein	S.X.	H.G.	Please select
0.73	90.8	1612513_at	CF203588.1	hypothetical protein LOC100250896	-	7e-49	At5g50920	CLPC1	S.X.	H.G.	Please select
0.57	79.8	1620264_x_at	CF201907.1	-	-	2e-1	At5g10860	CBS domain-containing protein	S.X.	H.G.	Please select
0.50	72.7	1621187_s_at	CF201896.1	-	-	8e+0	At5g50345	-	S.X.	H.G.	Please select
0.35	48.5	1616230_x_at	CF202354.1	-	-	2e+1	At5g43510	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.6	99.8	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
12.9	99.8	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
11.8	99.8	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
11.0	99.7	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
10.5	99.7	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
9.5	99.6	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
9.3	99.6	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
9.0	99.5	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
8.9	99.5	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
8.6	99.5	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.64	7e-78	287	1621187_s_at	CF201896.1	-	-	8e+0	At5g50345	-	C.G.	S.X.	Please select
0.38	1e-48	190	1612161_s_at	CF519066	hypothetical protein LOC100244643	-	1e-15	At2g42590	GRF9 (GENERAL REGULATORY FACTOR 9)	C.G.	S.X.	Please select
0.25	4e-42	169	1619894_at	CF204831.1	hypothetical protein LOC100244643	-	2e-43	At2g42590	GRF9 (GENERAL REGULATORY FACTOR 9)	C.G.	S.X.	Please select
0.04	4e-2	36	1617104_at	CF415263	hypothetical protein LOC100266267	-	4e-53	At5g52470	FIB1 (FIBRILLARIN 1)	C.G.	S.X.	Please select
0.03	6e-1	32	1610362_at	CA813623	-	-	2e-6	At3g12900	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select
0.02	3e+0	30	1622867_s_at	CB342248	hypothetical protein LOC100264026	-	7e-72	At5g13650	elongation factor family protein	C.G.	S.X.	Please select
0.04	3e+0	30	1617508_a_at	CF404361	hypothetical protein LOC100244876	-	2e-20	At3g61540	peptidase family protein	C.G.	S.X.	Please select
0.02	3e+0	30	1617044_at	CF214526	-	-	6e-32	At5g14660	PDF1B (PEPTIDE DEFORMYLASE 1B)	C.G.	S.X.	Please select
0.07	3e+0	30	1616230_x_at	CF202354.1	-	-	2e+1	At5g43510	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	8e+0	30	Arabidopsis thaliana	At5g50345	5008303	-	Encodes a Maternally expressed gene (MEG) family protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e+1	30	Glycine max	HgAffx.4022.1.A1_at	CK348668	-	-	8e+0	At4g08691	unknown protein	C.G.	S.X.	Please select
0.06	1e+0	32	Hordeum vulgare	HT12J15u_x_at	HT12J15u	-	-	2e+0	At3g01410	RNase H domain-containing protein	C.G.	S.X.	Please select
0.02	1e+0	34	Oryza sativa	Os04g0405800	AK108757.1	-	Uridylate kinase (EC 2.7.4.-) (UK) (Uridinemonophosphate kinase) (UMP kinase)	8e-4	At3g18680	aspartate/glutamate/uridylate kinase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	7e-1	34	Populus trichocarpa	PtpAffx.26427.1.A1_at	CK097670	-	-	1e+0	At4g15030	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	2e+0	32	Triticum aestivum	TaAffx.32098.1.S1_at	CA600929	-	-	9e-1	At3g22160	VQ motif-containing protein	C.G.	S.X.	Please select
0.04	4e+0	30	Zea mays	Zm.8802.1.A1_at	BM075706	-	-	4e+0	At3g05590	RPL18 (RIBOSOMAL PROTEIN L18)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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