Gene omics information

Query gene ID	1609887_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	75.2	1609887_at	CF205557.1	-	-	1e-19	At5g53160	unknown protein	S.X.	H.G.	Please select
0.80	93.6	1610891_x_at	CF201787.1	-	-	8e-1	At4g34760	auxin-responsive family protein	S.X.	H.G.	Please select
0.67	87.9	1618899_at	CF206580.1	-	-	7e-18	At5g57040	lactoylglutathione lyase family protein / glyoxalase I family protein	S.X.	H.G.	Please select
0.44	64.1	1618894_at	CF201787.1	-	-	8e-1	At4g34760	auxin-responsive family protein	S.X.	H.G.	Please select
0.35	48.5	1606916_at	CF202248.1	-	-	1e-1	At3g10640	VPS60.1	S.X.	H.G.	Please select
0.19	20.9	1621847_at	CF202726.1	hypothetical protein LOC100267426	-	4e+0	At4g17310	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.3	99.6	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
9.1	99.5	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
9.0	99.5	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
8.5	99.4	GSM147724	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	53
8.4	99.4	GSM147738	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	67
7.5	99.2	GSM147731	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	60
6.5	98.9	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
6.5	98.9	GSM147719	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	48
5.7	98.5	GSM147730	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	59
4.5	97.5	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.48	0	971	1619343_at	CB349349	hypothetical protein LOC100251890	-	4e-27	At5g53160	unknown protein	C.G.	S.X.	Please select
0.30	7e-40	163	1606933_a_at	CB007886	-	-	1e-20	At1g01360	unknown protein	C.G.	S.X.	Please select
0.15	2e-15	81	1615816_s_at	CF514066	hypothetical protein LOC100243084	-	2e-6	At1g01360	unknown protein	C.G.	S.X.	Please select
0.04	4e-4	44	1610583_at	CF512529	hypothetical protein LOC100242938	-	1e+0	At1g60730	aldo/keto reductase family protein	C.G.	S.X.	Please select
0.02	4e-1	34	1617655_at	CB348593	hypothetical protein LOC100262391	-	5e-10	At3g16620	ATTOC120	C.G.	S.X.	Please select
0.03	2e+0	32	1618694_at	CD802433	hypothetical protein LOC100247006	-	4e+0	At3g23165	LCR42 (Low-molecular-weight cysteine-rich 42)	C.G.	S.X.	Please select
0.03	2e+0	32	1617630_at	CF514753	hypothetical protein LOC100251032	-	3e-10	At3g52750	FTSZ2-2	C.G.	S.X.	Please select
0.03	2e+0	32	1609077_at	CF606671	hypothetical protein LOC100264912	-	3e-13	At5g16050	GRF5 (GENERAL REGULATORY FACTOR 5)	C.G.	S.X.	Please select
0.02	7e+0	30	1621305_s_at	CA814305	hypothetical protein LOC100257814	-	5e-7	At4g05530	IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	1e-19	97	Arabidopsis thaliana	At5g53160	835397	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.32	3e-42	173	Glycine max	GmaAffx.921.1.S1_at	BU545697	-	-	2e-25	At5g53160	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	HVSMEn0024O03f_s_at	HVSMEn0024O03f	-	-	3e+0	At5g40370	glutaredoxin, putative	C.G.	S.X.	Please select
0.13	1e-14	81	Oryza sativa	Os05g0213500	AK065280.1	-	Conserved hypothetical protein	6e-7	At5g53160	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.34	5e-29	129	Populus trichocarpa	PtpAffx.3029.1.S1_at	CV226790	hypothetical protein	-	4e-17	At5g53160	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.08	6e-6	52	Triticum aestivum	TaAffx.109881.1.S1_at	CA667553	-	-	7e-3	At1g01360	unknown protein	C.G.	S.X.	Please select
0.08	3e-9	61	Zea mays	Zm.12315.1.S1_at	BM380411	hypothetical protein LOC100273048	-	2e-7	At1g01360	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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