Gene omics information

Query gene ID	1609798_at
Gene name	hypothetical protein LOC100255432
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.93	99.2	1609798_at	CB980206	hypothetical protein LOC100255432	-	7e-30	At5g28300	trihelix DNA-binding protein, putative	S.X.	H.G.	Please select
0.36	50.7	1616858_at	BQ798567	hypothetical protein LOC100252226 /// hypothetical protein LOC100254728	-	4e-3	At3g12740	ALIS1 (ALA-INTERACTING SUBUNIT 1)	S.X.	H.G.	Please select
0.29	37.7	1614128_at	CB916225	similar to ubiquitin carrier protein	-	5e-82	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	S.X.	H.G.	Please select
0.25	30.5	1622781_a_at	CF214778	hypothetical protein LOC100252992	-	1e-46	At3g09900	ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E)	S.X.	H.G.	Please select
0.25	30.5	1613515_at	CA809086	hypothetical protein LOC100257134	-	2e-1	At2g24070	unknown protein	S.X.	H.G.	Please select
0.24	28.7	1619979_at	CB973261	hypothetical protein LOC100243832	-	3e-1	At4g25280	adenylate kinase family protein	S.X.	H.G.	Please select
0.20	22.4	1607666_at	BQ792135	hypothetical protein LOC100267597	-	8e-11	At4g39150	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.10	10.3	1615335_s_at	CF205989.1	hypothetical protein LOC100241327	-	2e+0	At4g15760	MO1 (MONOOXYGENASE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.8	98.6	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
5.6	98.4	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.7	97.7	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.1	96.9	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.8	96.4	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.5	95.7	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.0	94.2	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.0	94.2	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-2	38	1621786_at	CB914345	hypothetical protein LOC100249921	-	2e-3	At5g67490	unknown protein	C.G.	S.X.	Please select
0.02	2e-2	38	1613177_at	CD004414	-	-	3e-3	At2g37240	-	C.G.	S.X.	Please select
0.03	4e-1	34	1617819_at	CD714842	-	-	1e+0	At3g06770	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please select
0.02	4e-1	34	1615182_at	CF210219	hypothetical protein LOC100264653	-	7e-71	At5g15490	UDP-glucose 6-dehydrogenase, putative	C.G.	S.X.	Please select
0.03	4e-1	34	1614005_at	CD714842	-	-	1e+0	At3g06770	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1618830_at	CF206629.1	-	-	5e-22	At1g51650	ATP synthase epsilon chain, mitochondrial	C.G.	S.X.	Please select
0.03	2e+0	32	1617075_at	CF513576	hypothetical protein LOC100244234	-	1e+0	At5g04740	ACT domain-containing protein	C.G.	S.X.	Please select
0.02	2e+0	32	1615003_s_at	CF209961	hypothetical protein LOC100248446	-	9e-27	At1g51650	ATP synthase epsilon chain, mitochondrial	C.G.	S.X.	Please select
0.02	2e+0	32	1612612_at	BQ792194	hypothetical protein LOC100267829	-	3e-52	At4g09000	14-3-3-like protein GF14 chi / general regulatory factor 1 (GRF1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	7e-30	131	Arabidopsis thaliana	At5g28300	832914	trihelix DNA-binding protein, putative	F:transcription factor activity;P:regulation of transcription;C:chloroplast;OMPFBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.20	3e-39	163	Glycine max	GmaAffx.49204.1.S1_at	BE022511	trihelix transcription factor	-	7e-12	At5g28300	trihelix DNA-binding protein, putative	C.G.	S.X.	Please select
0.05	4e-5	48	Hordeum vulgare	Contig19599_at	Contig19599	-	-	6e-3	At2g39320	OTU-like cysteine protease family protein	C.G.	S.X.	Please select
0.03	3e+0	34	Oryza sativa	OsAffx.30022.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	2e-49	196	Populus trichocarpa	PtpAffx.222704.1.S1_at	pmrna40287	hypothetical protein	-	1e-14	At5g28300	trihelix DNA-binding protein, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	TaAffx.83374.1.S1_at	CA658276	-	-	2e-1	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	C.G.	S.X.	Please select
0.02	2e+0	32	Zea mays	Zm.1607.1.A1_at	AY111336.1	-	-	2e+0	At2g47840	tic20 protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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