Gene omics information

Query gene ID	1609774_s_at
Gene name	hypothetical protein LOC100258211
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1609774_s_at	CA817625	hypothetical protein LOC100258211	-	2e-34	At5g45130	RHA1 (RAB HOMOLOG 1)	S.X.	H.G.	Please select
0.46	66.5	1619904_at	CB974700	-	-	8e-42	At5g42300	UBL5 (UBIQUITIN-LIKE PROTEIN 5)	S.X.	H.G.	Please select
0.33	45.7	1608449_at	CB349956	hypothetical protein LOC100247109	-	6e-72	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	S.X.	H.G.	Please select
0.26	32.0	1622486_at	CF510820	hypothetical protein LOC100247768	-	3e-13	At4g13520	SMAP1 (SMALL ACIDIC PROTEIN 1)	S.X.	H.G.	Please select
0.15	15.6	1614946_at	CF510992	hypothetical protein LOC100258219	-	8e-64	At4g24820	26S proteasome regulatory subunit, putative (RPN7)	S.X.	H.G.	Please select
0.11	11.3	1621416_at	CF514904	hypothetical protein LOC100263998	-	5e-94	At1g49300	RABG3E (RAB GTPASE HOMOLOG G3E)	S.X.	H.G.	Please select
0.11	11.3	1609017_s_at	CA809548	hypothetical protein LOC100262493	-	1e-6	At3g14430	unknown protein	S.X.	H.G.	Please select
0.09	9.4	1619057_at	CD799697	hypothetical protein LOC100252925	-	1e-17	At1g56700	pyrrolidone-carboxylate peptidase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.5	95.7	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.0	94.2	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.0	94.2	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6	92.5	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436392	V. riparia (VR, PI588259) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	4e-70	264	1610878_at	CF200890.1	-	-	2e-1	At4g13560	UNE15 (unfertilized embryo sac 15)	C.G.	S.X.	Please select
0.07	2e-7	56	1617547_at	CF206255.1	-	-	9e-8	At5g45130	RHA1 (RAB HOMOLOG 1)	C.G.	S.X.	Please select
0.11	2e-7	56	1606614_at	CF513572	hypothetical protein LOC100259459	-	8e-6	At5g45130	RHA1 (RAB HOMOLOG 1)	C.G.	S.X.	Please select
0.03	5e-5	48	1614666_s_at	CF207291	hypothetical protein LOC100263448	-	2e-3	At5g45130	RHA1 (RAB HOMOLOG 1)	C.G.	S.X.	Please select
0.03	5e-5	48	1609123_at	CF215118	hypothetical protein LOC100259150	-	2e-55	At1g09630	ATRAB11C (ARABIDOPSIS RAB GTPASE 11C)	C.G.	S.X.	Please select
0.02	4e-2	38	1615710_s_at	CF215154	hypothetical protein LOC100249742	-	5e-103	At1g52280	AtRABG3d (Arabidopsis Rab GTPase homolog G3d)	C.G.	S.X.	Please select
0.02	4e-2	38	1611948_at	CF215154	hypothetical protein LOC100249742	-	5e-103	At1g52280	AtRABG3d (Arabidopsis Rab GTPase homolog G3d)	C.G.	S.X.	Please select
0.02	4e-2	38	1611372_at	CD711835	-	-	9e-61	At1g43890	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)	C.G.	S.X.	Please select
0.02	4e-2	38	1607396_s_at	CD711835	hypothetical protein LOC100266035	-	9e-61	At1g43890	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	2e-34	147	Arabidopsis thaliana	At5g45130	834549	RHA1 (RAB HOMOLOG 1)	small GTP binding protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.41	2e-125	450	Glycine max	Gma.6207.1.S1_s_at	CF922738	-	-	7e-16	At4g19640	ARA7	C.G.	S.X.	Please select
0.20	5e-6	52	Hordeum vulgare	Contig6326_at	Contig6326	-	-	6e-7	At5g45130	RHA1 (RAB HOMOLOG 1)	C.G.	S.X.	Please select
0.21	5e-12	73	Oryza sativa	Os12g0631100	AY029301.1	-	Ras GTPase family protein	1e-8	At5g45130	RHA1 (RAB HOMOLOG 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.31	4e-21	103	Populus trichocarpa	Ptp.1287.2.S1_s_at	CX178052	hypothetical protein	-	2e-73	At5g45130	RHA1 (RAB HOMOLOG 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.23	1e-17	91	Triticum aestivum	TaAffx.57540.1.S1_at	CA627313	-	-	6e-5	At4g19640	ARA7	C.G.	S.X.	Please select
0.20	8e-23	107	Zea mays	Zm.14020.1.A1_at	BM076055	hypothetical protein LOC100191530	-	7e-16	At5g45130	RHA1 (RAB HOMOLOG 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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