CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1609751_at

Gene name hypothetical protein LOC100253636

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.56 79.4 1609751_at CA817020 hypothetical protein LOC100253636 - 5e-51 At5g18520 - S.X. H.G.
0.75 91.3 1621699_at CF212982 hypothetical protein LOC100248753 - 2e-35 At5g09260 VPS20.2 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20.2) S.X. H.G.
0.63 84.3 1609816_at CF514960 hypothetical protein LOC100264261 - 2e-6 At5g08560 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.61 83.2 1618198_at CB007829 hypothetical protein LOC100242410 - 3e-1 At1g51200 zinc finger (AN1-like) family protein S.X. H.G.
0.53 75.2 1616458_s_at CF515510 hypothetical protein LOC100256310 - 1e-1 At3g43910 unknown protein S.X. H.G.
0.47 67.7 1607134_at BQ794051 hypothetical protein LOC100243531 - 2e+0 At3g51100 unknown protein S.X. H.G.
0.46 66.5 1611513_s_at CF414212 hypothetical protein LOC100262157 - 2e-1 At3g49950 scarecrow transcription factor family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.4 91.3 GSM287899 Red soft berry C13 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.2 89.9 GSM287894 Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.2 89.9 GSM287897 Red soft berry C29 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.1 89.1 GSM287903 Red soft berry A7 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.1 89.1 GSM287893 Pink soft berry C12 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.1 89.1 GSM287884 Green soft berry C7 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
2.0 88.2 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
2.0 88.2 GSM287892 Pink soft berry C11 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM287891 Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.52 0 860 1609284_at CF568962 - - 5e-18 At3g09570 - C.G. S.X.
0.03 3e-6 52 1618354_at CD711383 hypothetical protein LOC100257006 - 1e+0 At3g52820 PAP22 (PURPLE ACID PHOSPHATASE 22) C.G. S.X.
0.03 3e-6 52 1614583_at CD711383 - - 1e+0 At3g52820 PAP22 (PURPLE ACID PHOSPHATASE 22) C.G. S.X.
0.03 3e-6 52 1613459_at BQ798130 hypothetical protein LOC100250844 - 6e-6 At4g29660 EMB2752 (EMBRYO DEFECTIVE 2752) C.G. S.X.
0.02 1e-5 50 1622219_at CF403872 hypothetical protein LOC100243554 - 9e-10 At4g00755 F-box family protein C.G. S.X.
0.02 5e-5 48 1617182_at CB921793 - - 5e-3 At1g62240 unknown protein C.G. S.X.
0.02 5e-5 48 1615736_at CD711591 - - 7e+0 At5g40570 surfeit locus protein 2 family protein / SURF2 family protein C.G. S.X.
0.02 5e-5 48 1614844_at CB005866 - - 1e-3 At1g11790 ADT1 (arogenate dehydratase 1) C.G. S.X.
0.02 5e-5 48 1613755_at CB975521 hypothetical protein LOC100253264 - 9e-2 At4g04080 ISU3 (ISCU-LIKE 3) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 5e-51 202 Arabidopsis thaliana At5g18520 831970 - F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOFB - - - C.G. S.X.
0.31 1e-33 145 Glycine max GmaAffx.82783.1.S1_at BG653673 - - 5e-54 At5g18520 - C.G. S.X.
0.06 6e-6 52 Hordeum vulgare Contig16757_at Contig16757 - - 3e-2 At3g09570 - C.G. S.X.
0.04 2e-5 52 Oryza sativa Os.6681.1.S1_at - - - 0 C.G. S.X.
0.38 4e-86 319 Populus trichocarpa PtpAffx.59090.1.A1_at CV283598 hypothetical protein - 2e-74 At3g09570 - C.G. S.X.
0.03 3e-6 54 Triticum aestivum TaAffx.80796.1.S1_at CA692425 - - 1e+1 At4g30690 translation initiation factor 3 (IF-3) family protein C.G. S.X.
0.03 2e-5 50 Zea mays Zm.14917.1.A1_at BM378490 - - 9e-1 At1g04330 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage