CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1609744_at

Gene name hypothetical protein LOC100240811 /// hypothetical protein LOC100263073

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1609744_at CF203760.1 hypothetical protein LOC100240811 /// hypothetical protein LOC100263073 - 2e+0 At3g42630 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.61 83.2 1610600_at CA813949 hypothetical protein LOC100242774 /// hypothetical protein LOC100248732 /// hypothetical protein LOC100253829 - 3e-1 At3g08580 AAC1 (ADP/ATP CARRIER 1) S.X. H.G.
0.56 79.4 1622670_s_at CF207059.1 hypothetical protein LOC100242012 - 1e+1 At5g05590 PAI2 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2) S.X. H.G.
0.55 77.3 1618355_at CB837772 - - 1e+0 At2g16750 protein kinase family protein S.X. H.G.
0.44 64.1 1609397_at CF512090 hypothetical protein LOC100248717 - 1e-35 At5g64300 ATGCH S.X. H.G.
0.44 64.1 1615458_at CB969727 hypothetical protein LOC100255664 - 2e+0 At5g16490 RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
36.9 100.0 GSM299456 C_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
30.5 100.0 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
17.1 99.9 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
15.7 99.9 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
9.6 99.6 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.6 99.5 GSM147681 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 10
8.4 99.4 GSM299460 D_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.3 99.2 GSM299452 B_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.1 99.1 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.8 99.0 GSM299455 C_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 5e-35 147 1622241_x_at CF205868.1 - - 4e-1 At2g22155 - C.G. S.X.
0.18 5e-35 147 1616018_at CF205868.1 - - 4e-1 At2g22155 - C.G. S.X.
0.02 2e+0 32 1620570_at CB972058 hypothetical LOC100242221 - 1e-20 At3g59530 strictosidine synthase family protein C.G. S.X.
0.01 2e+0 32 1617939_s_at CB910883 hypothetical protein LOC100245856 - 4e-6 At4g19420 pectinacetylesterase family protein C.G. S.X.
0.01 2e+0 32 1616981_at CB971105 phospholipase D alpha - 4e-52 At3g15730 PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1) C.G. S.X.
0.02 2e+0 32 1611296_at BM437675 hypothetical protein LOC100265112 - 4e-16 At4g22920 NYE1 (NON-YELLOWING 1) C.G. S.X.
0.02 2e+0 32 1611143_at CF372549 hypothetical protein LOC100266764 - 4e+0 At1g14490 DNA-binding protein-related C.G. S.X.
0.03 2e+0 32 1610377_at CF413900 - - 5e-1 At5g54410 unknown protein C.G. S.X.
0.01 8e+0 30 1622720_s_at BQ794584 YS1-like protein-like - 8e-10 At4g24120 YSL1 (YELLOW STRIPE LIKE 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Arabidopsis thaliana At3g42630 823280 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:chloroplast;PO - - - C.G. S.X.
0.03 2e+0 34 Glycine max GmaAffx.51101.1.S1_at BU579058 - - 9e-1 At2g32030 GCN5-related N-acetyltransferase (GNAT) family protein C.G. S.X.
0.03 8e-1 34 Hordeum vulgare Contig16574_at Contig16574 - - 1e+0 At1g26940 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein C.G. S.X.
0.03 3e+0 34 Oryza sativa OsAffx.7583.1.S1_at - - - 0 C.G. S.X.
0.05 2e+0 34 Populus trichocarpa PtpAffx.221801.1.S1_at pmrna38857 hypothetical protein - 1e+0 At5g43185 Expressed protein C.G. S.X.
0.05 5e-1 36 Triticum aestivum TaAffx.19096.1.S1_at AJ615237 - - 7e+0 At2g27730 unknown protein C.G. S.X.
0.03 3e+0 32 Zea mays Zm.15937.1.A1_at CO520791 - - 5e+0 At3g25200 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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