Gene omics information

Query gene ID	1609684_at
Gene name	similar to pyruvate decarboxylase
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	80.6	1609684_at	CB009168	similar to pyruvate decarboxylase	-	3e-41	At5g54960	PDC2 (pyruvate decarboxylase-2)	S.X.	H.G.	Please select
0.91	98.8	1618981_at	BQ797430	hypothetical protein LOC100261093	-	2e-35	At5g14780	FDH (FORMATE DEHYDROGENASE)	S.X.	H.G.	Please select
0.83	94.6	1619798_at	CF206345.1	-	-	6e+0	At5g50740	metal ion binding	S.X.	H.G.	Please select
0.73	90.8	1611428_at	CD797261	hypothetical protein LOC100242068	-	1e+0	At5g48470	unknown protein	S.X.	H.G.	Please select
0.47	67.7	1615778_at	BQ792775	hypothetical protein LOC100253193	-	1e-3	At2g42670	unknown protein	S.X.	H.G.	Please select
0.46	66.5	1617698_at	BM436537	hypothetical protein LOC100259464	-	5e-23	At1g30910	molybdenum cofactor sulfurase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.8	99.8	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
10.3	99.6	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
10.0	99.6	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
9.9	99.6	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
9.1	99.5	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.8	99.5	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.7	99.3	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.6	99.3	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.5	99.2	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.3	99.2	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	1e-49	196	1621682_s_at	CF404793	pyruvate decarboxylase 1	-	5e-52	At5g54960	PDC2 (pyruvate decarboxylase-2)	C.G.	S.X.	Please select
0.10	5e-37	155	1611322_at	CF202963.1	pyruvate decarboxylase 1	-	2e-15	At5g54960	PDC2 (pyruvate decarboxylase-2)	C.G.	S.X.	Please select
0.04	6e-6	52	1620983_at	CF207286	hypothetical protein LOC100267272	-	3e-10	At5g01320	pyruvate decarboxylase, putative	C.G.	S.X.	Please select
0.01	3e-1	36	1616208_at	BQ796161	hypothetical protein LOC100252980	-	5e-3	At3g11020	DREB2B (DRE/CRT-BINDING PROTEIN 2B)	C.G.	S.X.	Please select
0.01	3e-1	36	1610527_at	CA815926	hypothetical protein LOC100260552	-	4e-3	At3g18830	ATPLT5 (POLYOL TRANSPORTER 5)	C.G.	S.X.	Please select
0.01	1e+0	34	1622204_at	CD010127	-	-	5e-3	At5g48550	F-box family protein-related	C.G.	S.X.	Please select
0.01	1e+0	34	1619506_s_at	CB981155	hypothetical protein LOC100250330	-	4e-5	At2g16595	-	C.G.	S.X.	Please select
0.01	1e+0	34	1615137_at	CB347116	hypothetical protein LOC100256319	-	6e-159	At1g56340	CRT1 (CALRETICULIN 1)	C.G.	S.X.	Please select
0.01	1e+0	34	1612291_at	CB347450	hypothetical protein LOC100264203	-	2e-26	At1g56340	CRT1 (CALRETICULIN 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	3e-41	171	Arabidopsis thaliana	At5g54960	835587	PDC2 (pyruvate decarboxylase-2)	pyruvate decarboxylase-2	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.39	1e-139	498	Glycine max	Gma.7310.1.S1_at	BQ630696	-	-	3e-18	At4g33070	pyruvate decarboxylase, putative	C.G.	S.X.	Please select
0.26	2e-31	137	Hordeum vulgare	Contig2867_at	Contig2867	-	-	8e-14	At5g01320	pyruvate decarboxylase, putative	C.G.	S.X.	Please select
0.29	3e-46	188	Oryza sativa	Os03g0293500	AK119500.1	-	Pyruvate decarboxylase isozyme 2 (EC 4.1.1.1)(PDC) (Fragment)	2e-24	At5g01320	pyruvate decarboxylase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.55	2e-129	464	Populus trichocarpa	PtpAffx.225359.1.S1_at	pmrna44657	hypothetical protein	-	2e-20	At5g54960	PDC2 (pyruvate decarboxylase-2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.30	2e-26	121	Triticum aestivum	Ta.19423.1.S1_a_at	CD934753	-	-	2e-36	At5g54960	PDC2 (pyruvate decarboxylase-2)	C.G.	S.X.	Please select
0.28	3e-42	173	Zea mays	Zm.3994.1.S1_at	AF370005.1	pyruvate decarboxylase3	-	2e-14	At5g01320	pyruvate decarboxylase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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