CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1609644_at

Gene name hypothetical protein LOC100260722 /// hypothetical protein LOC100260971 /// hypothetical protein LOC100262489

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.57 79.8 1609644_at BQ799340 hypothetical protein LOC100260722 /// hypothetical protein LOC100260971 /// hypothetical protein LOC100262489 - 2e-14 At2g24280 serine carboxypeptidase S28 family protein S.X. H.G.
0.67 87.9 1612100_at CF215638 hypothetical protein LOC100248200 - 4e+0 At5g03840 TFL1 (TERMINAL FLOWER 1) S.X. H.G.
0.44 64.1 1615191_at BQ794962 hypothetical protein LOC100254381 - 5e-32 At4g37510 ribonuclease III family protein S.X. H.G.
0.43 61.5 1612750_at CA817715 hypothetical protein LOC100248749 - 2e+0 At3g55390 integral membrane family protein S.X. H.G.
0.35 48.5 1609396_at CF210676 hypothetical protein LOC100249947 - 3e-10 At2g32180 PTAC18 (PLASTID TRANSCRIPTIONALLY ACTIVE 18) S.X. H.G.
0.34 46.8 1614345_s_at CA814149 hypothetical protein LOC100248615 - 1e-19 At4g26670 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein S.X. H.G.
0.34 46.8 1613696_at CA817501 hypothetical protein LOC100242891 - 1e+0 At2g25720 unknown protein S.X. H.G.
0.30 39.4 1612576_at CF209978 hypothetical protein LOC100242562 - 4e-2 At1g47720 OSB1 (Organellar Single-stranded) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.7 99.7 GSM147698 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation 27
10.5 99.7 GSM147680 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 9
8.6 99.5 GSM147674 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 3
7.9 99.3 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
7.8 99.3 GSM147686 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 15
6.6 98.9 GSM147692 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation 21
6.3 98.8 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
5.7 98.5 GSM147693 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 22
4.5 97.5 GSM147704 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation 33
4.3 97.2 GSM147699 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 28
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 8e-5 46 1614626_at CF208834 - - 1e-22 At5g65760 serine carboxypeptidase S28 family protein C.G. S.X.
0.03 3e-1 34 1611140_at CB836749 - - 1e+0 At1g68862 unknown protein C.G. S.X.
0.02 3e-1 34 1607706_at CA818521 hypothetical protein LOC100246564 - 5e-41 At4g04190 unknown protein C.G. S.X.
0.03 3e-1 34 1607330_at CB836749 - - 1e+0 At1g68862 unknown protein C.G. S.X.
0.02 1e+0 32 1618241_at CF513295 hypothetical protein LOC100252311 - 6e-28 At5g43130 TAF4 (TBP-ASSOCIATED FACTOR 4) C.G. S.X.
0.02 1e+0 32 1615065_at CB982897 similar to mitochondrial substrate carrier family protein - 7e-28 At1g72820 mitochondrial substrate carrier family protein C.G. S.X.
0.03 1e+0 32 1613156_at CF209286 hypothetical protein LOC100247989 - 6e-5 At1g53400 unknown protein C.G. S.X.
0.03 1e+0 32 1612957_at CF513158 hypothetical protein LOC100248904 - 3e-10 At1g22310 MBD8 C.G. S.X.
0.02 1e+0 32 1611613_at BQ796771 hypothetical protein LOC100256970 - 3e+0 At4g15630 integral membrane family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 2e-14 79 Arabidopsis thaliana At2g24280 816963 serine carboxypeptidase S28 family protein F:serine-type peptidase activity, serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system, lysosome;MOFPB - - - C.G. S.X.
0.03 2e+0 34 Glycine max GmaAffx.75919.1.S1_at AW705088 - - 3e+0 At5g12230 unknown protein C.G. S.X.
0.04 8e+0 30 Hordeum vulgare HVSMEf0015C12f_at HVSMEf0015C12f - - 3e+0 At3g26060 ATPRX Q C.G. S.X.
0.03 8e+0 32 Oryza sativa Os09g0301900 9637.m01033 - - 2e+1 At3g46380 unknown protein C.G. S.X.
0.14 3e-17 89 Populus trichocarpa PtpAffx.10532.1.S1_a_at CV237901 - - 6e-45 At2g24280 serine carboxypeptidase S28 family protein C.G. S.X.
0.04 2e-2 40 Triticum aestivum Ta.30353.3.S1_a_at CA639985 - - 9e-23 At5g12040 carbon-nitrogen hydrolase family protein C.G. S.X.
0.03 8e-3 40 Zea mays Zm.6703.1.A1_at CA398710 hypothetical protein LOC100273224 - 1e+0 At2g01120 ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage