Gene omics information

Query gene ID	1609630_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	84.3	1609630_at	CB002524	-	-	4e-14	At3g14205	phosphoinositide phosphatase family protein	S.X.	H.G.	Please select
0.52	73.9	1620333_at	CF608264	-	-	1e-10	At3g08020	protein binding / zinc ion binding	S.X.	H.G.	Please select
0.36	50.7	1616416_at	CB349840	hypothetical protein LOC100251243	-	7e+0	At3g43740	leucine-rich repeat family protein	S.X.	H.G.	Please select
0.17	18.2	1621260_at	BQ797265	-	-	3e-1	At4g30630	unknown protein	S.X.	H.G.	Please select
0.10	10.3	1609587_at	CF202068.1	-	-	5e-9	At1g32220	binding / catalytic/ coenzyme binding	S.X.	H.G.	Please select
0.09	9.4	1612983_at	CB344129	hypothetical protein LOC100249094	-	1e-1	At3g15790	MBD11	S.X.	H.G.	Please select
0.04	5.2	1606787_at	CF373239	hypothetical protein LOC100258674	-	4e-1	At1g13620	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.6	97.6	GSM147712	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	41
4.2	97.1	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
4.1	96.9	GSM147738	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	67
3.8	96.4	GSM147713	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	42
3.5	95.7	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.5	95.7	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
3.4	95.5	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
3.3	95.2	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
3.2	94.9	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
2.8	93.4	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1947	1622238_at	CF609236	hypothetical protein LOC100242326	-	4e-14	At3g14205	phosphoinositide phosphatase family protein	C.G.	S.X.	Please select
0.10	4e-8	57	1613427_at	CF415831	hypothetical LOC100249754	-	2e-2	At1g61170	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	36	1609544_at	CB343643	-	-	1e-1	At2g17770	ATBZIP27	C.G.	S.X.	Please select
0.01	6e-1	34	1614676_s_at	BQ793152	ATP synthase subunit a, chloroplastic	-	0	Atcg00120	-	C.G.	S.X.	Please select
0.02	6e-1	34	1610851_at	CF201108.1	-	-	3e-1	At4g00870	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.01	6e-1	34	1609916_s_at	CD005933	hypothetical protein LOC100266722	-	0	Atcg00120	-	C.G.	S.X.	Please select
0.01	6e-1	34	1608138_s_at	CB342671	-	-	0	Atcg00120	-	C.G.	S.X.	Please select
0.02	2e+0	32	1621862_at	CF510931	hypothetical protein LOC100267900	-	2e+0	At1g15930	40S ribosomal protein S12 (RPS12A)	C.G.	S.X.	Please select
0.02	2e+0	32	1618467_at	CD797847	similar to UBX domain-containing protein	-	7e-3	At4g10790	UBX domain-containing protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	4e-14	79	Arabidopsis thaliana	At3g14205	820638	phosphoinositide phosphatase family protein	F:phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity;P:biological_process unknown;C:cellular_component unknown;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.44	1e-70	268	Glycine max	Gma.8773.1.S1_at	BE657861	-	-	1e-21	At3g43220	phosphoinositide phosphatase family protein	C.G.	S.X.	Please select
0.06	3e-10	65	Hordeum vulgare	Contig10720_at	Contig10720	-	-	1e-39	At1g22620	ATSAC1 (suppressor of actin 1)	C.G.	S.X.	Please select
0.07	3e-7	57	Oryza sativa	Os02g0782600	AK059701.1	-	SAC domain protein 1 (FIG4-like protein AtFIG4)	1e-11	At1g22620	ATSAC1 (suppressor of actin 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.51	7e-115	414	Populus trichocarpa	PtpAffx.134562.1.A1_at	CV244799	hypothetical protein	-	2e-29	At3g43220	phosphoinositide phosphatase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	9e-9	61	Triticum aestivum	TaAffx.128744.1.S1_at	BG906875	-	-	3e-4	At3g14205	phosphoinositide phosphatase family protein	C.G.	S.X.	Please select
0.06	6e-8	57	Zea mays	Zm.9539.1.A1_at	AY105652.1	-	-	7e-8	At3g14205	phosphoinositide phosphatase family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage