Gene omics information

Query gene ID	1609591_at
Gene name	hypothetical protein LOC100241753
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	79.8	1609591_at	CD799271	hypothetical protein LOC100241753	-	1e-3	At3g61900	auxin-responsive family protein	S.X.	H.G.	Please select
0.77	92.3	1610108_at	BQ794851	-	-	1e+0	At4g31730	GDU1 (GLUTAMINE DUMPER 1)	S.X.	H.G.	Please select
0.67	87.9	1620050_at	CB009432	hypothetical protein LOC100244027	-	1e-5	At5g17500	glycosyl hydrolase family 5 protein / cellulase family protein	S.X.	H.G.	Please select
0.55	77.3	1616147_at	CF404954	hypothetical protein LOC100243192	-	2e-6	At2g26800	hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative	S.X.	H.G.	Please select
0.50	72.7	1606482_at	BQ796112	hypothetical protein LOC100243077	-	3e-10	At3g44830	lecithin:cholesterol acyltransferase family protein / LACT family protein	S.X.	H.G.	Please select
0.44	64.1	1615374_at	CB911656	hypothetical protein LOC100241955	-	8e-1	At1g34000	OHP2 (ONE-HELIX PROTEIN 2)	S.X.	H.G.	Please select
0.32	43.1	1618576_at	BQ800615	pectate lyase PL1-like	-	4e-124	At4g13710	pectate lyase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.8	99.9	GSM287893	Pink soft berry C12 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
15.7	99.9	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
12.6	99.8	GSM287892	Pink soft berry C11 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
11.6	99.7	GSM287896	Pink soft berry C27 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
11.4	99.7	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
10.9	99.7	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
9.3	99.6	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
8.2	99.4	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
8.0	99.3	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
7.8	99.3	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	3e-11	67	1622100_at	BM436534	hypothetical protein LOC100267831	-	5e-7	At2g46690	auxin-responsive family protein	C.G.	S.X.	Please select
0.12	3e-11	67	1615541_s_at	BM436534	hypothetical protein LOC100267831	-	5e-7	At2g46690	auxin-responsive family protein	C.G.	S.X.	Please select
0.02	3e-2	38	1619022_at	CB969015	hypothetical protein LOC100266206	-	8e+0	Atcg00640	-	C.G.	S.X.	Please select
0.01	1e-1	36	1610061_at	CB982096	-	-	5e-49	At2g43790	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	C.G.	S.X.	Please select
0.03	1e-1	36	1608297_at	CF510600	hypothetical protein LOC100252927	-	1e+0	At5g37480	unknown protein	C.G.	S.X.	Please select
0.02	4e-1	34	1622753_at	CB982946	-	-	3e-33	At1g27970	NTF2B (NUCLEAR TRANSPORT FACTOR 2B)	C.G.	S.X.	Please select
0.02	4e-1	34	1621953_s_at	CB982946	hypothetical protein LOC100252245	-	3e-33	At1g27970	NTF2B (NUCLEAR TRANSPORT FACTOR 2B)	C.G.	S.X.	Please select
0.03	4e-1	34	1615277_at	CF201654.1	-	-	4e-31	At1g27970	NTF2B (NUCLEAR TRANSPORT FACTOR 2B)	C.G.	S.X.	Please select
0.03	2e+0	32	1621417_at	CD800545	-	-	6e-1	At4g12830	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	1e-3	44	Arabidopsis thaliana	At3g61900	825363	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.28	2e-13	77	Glycine max	GmaAffx.2744.1.S1_at	AW349891	-	-	5e-10	At2g46690	auxin-responsive family protein	C.G.	S.X.	Please select
0.03	7e-1	34	Hordeum vulgare	HW01C21u_at	HW01C21u	-	-	3e+0	At5g19480	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	38	Oryza sativa	Os01g0771100	AK106478.1	-	Mitochondrial glycoprotein family protein	4e-2	At5g23100	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.26	2e-12	73	Populus trichocarpa	PtpAffx.7409.1.S1_at	CV264125	SAUR family protein	-	1e-4	At4g00880	auxin-responsive family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	TaAffx.97866.1.S1_s_at	BQ802562	-	-	6e-3	At1g11240	unknown protein	C.G.	S.X.	Please select
0.02	1e+1	30	Zea mays	Zm.8787.1.A1_at	CB350639	-	-	3e-1	At3g01170	structural constituent of ribosome	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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