Gene omics information

Query gene ID	1609555_at
Gene name	hypothetical protein LOC100261123
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1609555_at	CD719835	hypothetical protein LOC100261123	-	2e-30	At5g08790	ATAF2	S.X.	H.G.	Please select
0.95	99.6	1616735_at	CF604749	hypothetical protein LOC100257315	-	1e+0	At5g50470	NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7)	S.X.	H.G.	Please select
0.89	95.5	1612288_at	CB969093	-	-	3e-1	At4g09040	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.89	95.5	1606845_at	CF212991	hypothetical protein LOC100257315	-	1e+0	At3g52510	-	S.X.	H.G.	Please select
0.84	94.8	1606462_at	CA817195	hypothetical protein LOC100248701	-	1e+0	At1g04970	lipid-binding serum glycoprotein family protein	S.X.	H.G.	Please select
0.84	94.8	1622012_at	CF204966.1	-	-	2e-2	At1g62760	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.82	93.9	1606429_at	CF373019	hypothetical protein LOC100251832	-	2e-1	At4g12390	PME1 (PECTIN METHYLESTERASE INHIBITOR 1)	S.X.	H.G.	Please select
0.82	93.9	1621244_s_at	CD797552	hypothetical protein LOC100246875	-	2e-5	At3g03980	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please select
0.82	93.9	1617334_s_at	CF607954	-	-	1e-9	At5g65660	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.78	92.6	1618561_at	CF204500.1	hypothetical protein LOC100246875	-	2e-5	At3g03980	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.6	100.0	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
30.0	100.0	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
29.1	100.0	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
17.0	99.9	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
15.2	99.9	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
15.0	99.9	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
13.4	99.8	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
12.2	99.8	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
11.4	99.7	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.6	99.5	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	2e-30	131	1620621_at	CF519062	similar to nam-like protein	-	4e-33	At1g01720	ATAF1	C.G.	S.X.	Please select
0.05	7e-9	59	1610254_at	CF517943	hypothetical protein LOC100266073	-	2e-5	At4g16530	unknown protein	C.G.	S.X.	Please select
0.04	3e-8	57	1609629_at	CF606022	hypothetical protein LOC100250476	-	3e-17	At5g13330	Rap2.6L (related to AP2 6L)	C.G.	S.X.	Please select
0.03	1e-7	56	1617192_at	AY137377.1	class IV chitinase	-	4e-2	At2g43570	chitinase, putative	C.G.	S.X.	Please select
0.03	1e-7	56	1616984_at	CD798634	hypothetical protein LOC100258748	-	1e-7	At2g36900	MEMB11 (MEMBRIN 11)	C.G.	S.X.	Please select
0.04	1e-7	56	1616772_at	CD799675	hypothetical protein LOC100244510	-	1e-6	At1g20670	DNA-binding bromodomain-containing protein	C.G.	S.X.	Please select
0.03	1e-7	56	1613318_at	BQ799524	sucrose responsive element binding protein	-	2e-10	At4g37260	MYB73 (MYB DOMAIN PROTEIN 73)	C.G.	S.X.	Please select
0.03	1e-7	56	1611897_s_at	CB347033	hypothetical protein LOC100243978	-	1e-47	At4g34050	caffeoyl-CoA 3-O-methyltransferase, putative	C.G.	S.X.	Please select
0.04	1e-7	56	1608950_at	CF606755	hypothetical protein LOC100251050	-	1e-6	At5g19200	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.43	2e-30	133	Arabidopsis thaliana	At5g08790	830779	ATAF2	induced by wounding, belongs to a large family of putative transcriptional activators with NAC domain.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.32	5e-32	139	Glycine max	Gma.1750.3.A1_at	AI442281	-	-	3e-16	At5g08790	ATAF2	C.G.	S.X.	Please select
0.30	1e-23	109	Hordeum vulgare	Contig6233_at	Contig6233	-	-	3e-8	At5g08790	ATAF2	C.G.	S.X.	Please select
0.32	3e-43	176	Oryza sativa	Os05g0421600	AK107746.1	-	Conserved hypothetical protein	3e-18	At1g01720	ATAF1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.33	3e-76	286	Populus trichocarpa	PtpAffx.2179.2.S1_at	BP929874	NAC domain protein, IPR003441	-	9e-25	At5g08790	ATAF2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.17	2e-9	63	Triticum aestivum	Ta.9497.1.S1_at	AL829472	-	-	1e-2	At1g01720	ATAF1	C.G.	S.X.	Please select
0.11	2e-4	46	Zea mays	Zm.14805.1.A1_at	BM380633	hypothetical protein LOC100280247	-	3e-6	At1g01720	ATAF1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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