Gene omics information

Query gene ID	1609490_s_at
Gene name	hypothetical protein LOC100267319
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	91.0	1609490_s_at	CK138152.1	hypothetical protein LOC100267319	-	6e-9	At4g24760	unknown protein	S.X.	H.G.	Please select
0.50	72.7	1611714_at	BQ794807	hypothetical protein LOC100264866	-	2e-61	At2g42500	PP2A-4	S.X.	H.G.	Please select
0.47	67.7	1622185_at	CF209948	-	-	3e-2	At1g78915	binding	S.X.	H.G.	Please select
0.40	57.7	1613071_at	CB975511	-	-	5e+0	At5g42070	unknown protein	S.X.	H.G.	Please select
0.40	57.7	1608829_at	CD802477	hypothetical protein LOC100258592	-	9e-24	At4g03415	catalytic/ protein serine/threonine phosphatase	S.X.	H.G.	Please select
0.35	48.5	1609364_at	CD013445	similar to thioredoxin-related protein	-	8e-6	At3g56580	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.28	37.7	1615059_at	CF212962	hypothetical protein LOC100246880	-	2e+0	At2g20463	-	S.X.	H.G.	Please select
0.20	22.4	1613281_at	CF513460	hypothetical protein LOC100249314	-	4e-33	At3g22440	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.3	95.2	GSM436402	V. riparia (VR, PI588259) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436397	V. riparia (VR, PI588259) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM436400	V. riparia (VR, PI588259) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM436362	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436355	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436410	V. riparia (VR, PI588259) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436398	V. riparia (VR, PI588259) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436412	V. riparia (VR, PI588259) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436421	V. riparia (VR, PI588259) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.59	0	918	1621286_at	CF213632	hypothetical protein LOC100267319	-	3e-6	At4g24760	unknown protein	C.G.	S.X.	Please select
0.05	3e-2	38	1616674_at	CF202340.1	hypothetical protein LOC100259513	-	1e-1	At4g12380	unknown protein	C.G.	S.X.	Please select
0.02	3e-2	38	1616811_at	CB347142	hypothetical protein LOC100252168	-	4e-21	At2g20560	DNAJ heat shock family protein	C.G.	S.X.	Please select
0.02	4e-1	34	1619254_at	BQ792176	hypothetical protein LOC100246665	-	9e-3	At1g74440	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1622516_at	CB835618	-	-	4e-1	At1g11500	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1622361_s_at	BQ799757	similar to cyclase	-	9e-31	At4g35220	cyclase family protein	C.G.	S.X.	Please select
0.03	2e+0	32	1621846_at	CF415605	-	-	7e-5	At4g26840	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1)	C.G.	S.X.	Please select
0.02	2e+0	32	1618688_at	CB835618	-	-	4e-1	At1g11500	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	1617423_at	CB969252	hypothetical protein LOC100245065	-	5e-8	At1g10360	ATGSTU18 (GLUTATHIONE S-TRANSFERASE TAU 18)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	6e-9	61	Arabidopsis thaliana	At4g24760	828578	unknown protein	F:unknown;P:unknown;C:unknown;OBMPFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	2e+0	34	Glycine max	GmaAffx.84035.1.A1_at	CD392213	-	-	3e+0	At5g09260	VPS20.2 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20.2)	C.G.	S.X.	Please select
0.04	3e-3	42	Hordeum vulgare	Contig18580_at	Contig18580	-	-	8e-16	At5g14390	-	C.G.	S.X.	Please select
0.03	7e-4	46	Oryza sativa	Os06g0633900	CA756504	-	Esterase/lipase/thioesterase domain containingprotein	7e+0	At4g31441	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	3e-5	50	Populus trichocarpa	Ptp.7164.1.S1_at	CV231766	hypothetical protein	-	2e-13	At4g24760	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	4e-1	36	Triticum aestivum	TaAffx.54452.1.S1_at	CA681425	-	-	1e+0	At1g21790	-	C.G.	S.X.	Please select
0.03	1e-1	36	Zea mays	Zm.5961.1.S1_at	AI665954	-	-	3e+0	At2g24970	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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