CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1609481_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.5 1609481_at BQ799713 - - 4e-45 At3g53580 diaminopimelate epimerase family protein S.X. H.G.
0.50 72.7 1613578_s_at BM437454 hypothetical protein LOC100258843 - 4e-29 At2g47490 mitochondrial substrate carrier family protein S.X. H.G.
0.36 50.7 1614253_at CB971268 hypothetical protein LOC100252844 - 5e-15 At4g02610 tryptophan synthase, alpha subunit, putative S.X. H.G.
0.27 34.0 1621283_at AF257777.1 H+-pyrophosphatase - 1e-93 At1g15690 AVP1 S.X. H.G.
0.25 30.5 1612831_s_at CF201533.1 H+-pyrophosphatase - 5e-9 At1g15690 AVP1 S.X. H.G.
0.12 12.1 1606838_at CB972815 hypothetical protein LOC100268132 - 3e-2 At1g68280 thioesterase-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.8 97.8 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.8 96.4 GSM147675 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 4
3.2 94.9 GSM299452 B_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.1 94.6 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7 93.0 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7 93.0 GSM299458 D_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6 92.5 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6 92.5 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5 91.9 GSM147705 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 34
2.4 91.3 GSM299451 B_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.61 0 1069 1607081_at BQ799686 - - 4e+0 At4g13870 WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE) C.G. S.X.
0.07 2e-13 75 1615491_at CD801416 hypothetical protein LOC100241380 - 5e+0 At4g14785 SCRL23 (SCR-Like 23) C.G. S.X.
0.02 2e-1 36 1620491_at CD800015 hypothetical protein LOC100257942 - 2e+0 At5g56540 AGP14 (ARABINOGALACTAN PROTEIN 14) C.G. S.X.
0.02 2e-1 36 1619557_at CB969263 - - 2e-5 At5g01640 PRA1.B5 (PRENYLATED RAB ACCEPTOR 1.B5) C.G. S.X.
0.01 2e-1 36 1617042_at CA812448 hypothetical protein LOC100253170 - 1e-14 At3g27010 AT-TCP20 C.G. S.X.
0.01 2e-1 36 1613429_s_at CB974870 hypothetical protein LOC100259515 - 0 At2g22240 MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2) C.G. S.X.
0.02 2e-1 36 1607338_at CF204358.1 hypothetical protein LOC100259515 - 8e-86 At2g22240 MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2) C.G. S.X.
0.02 7e-1 34 1617425_at BQ799379 hypothetical protein LOC100242172 - 2e-12 At5g21920 YGGT family protein C.G. S.X.
0.02 3e+0 32 1621770_at CB978874 - - 1e+0 At1g10030 ERG28 (Arabidopsis homolog of yeast ergosterol28) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.38 4e-45 182 Arabidopsis thaliana At3g53580 824526 diaminopimelate epimerase family protein F:diaminopimelate epimerase activity;P:lysine biosynthetic process via diaminopimelate;C:chloroplast;OBAPM - - - C.G. S.X.
0.47 3e-77 289 Glycine max Gma.6439.1.S1_at BE659084 - - 7e-34 At3g53580 diaminopimelate epimerase family protein C.G. S.X.
0.28 7e-30 131 Hordeum vulgare Contig10079_at Contig10079 - - 3e-18 At3g53580 diaminopimelate epimerase family protein C.G. S.X.
0.22 3e-26 121 Oryza sativa Os12g0567200 CB680362 - Diaminopimelate epimerase (EC 5.1.1.7) (DAPepimerase) 2e-17 At3g53580 diaminopimelate epimerase family protein C.G. S.X.
0.41 2e-63 244 Populus trichocarpa PtpAffx.206324.1.S1_at pmrna12556 hypothetical protein - 2e-26 At3g53580 diaminopimelate epimerase family protein C.G. S.X.
0.12 2e-13 77 Triticum aestivum Ta.20481.1.A1_at CA614346 - - 2e-2 At3g53580 diaminopimelate epimerase family protein C.G. S.X.
0.21 1e-27 123 Zea mays Zm.5046.1.S1_at AY104119.1 hypothetical protein LOC100191234 /// hypothetical protein LOC100273435 - 3e-19 At3g53580 diaminopimelate epimerase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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