Gene omics information

Query gene ID	1609442_at
Gene name	hypothetical protein LOC100243127
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	84.3	1609442_at	CF373210	hypothetical protein LOC100243127	-	3e-4	At3g05800	transcription factor	S.X.	H.G.	Please select
0.67	87.9	1620804_at	CD797824	hypothetical protein LOC100267227	-	3e-114	At1g55360	unknown protein	S.X.	H.G.	Please select
0.60	81.9	1608829_at	CD802477	hypothetical protein LOC100258592	-	9e-24	At4g03415	catalytic/ protein serine/threonine phosphatase	S.X.	H.G.	Please select
0.53	75.2	1609302_at	CB979609	similar to somatic embryogenesis receptor kinase	-	7e-14	At1g34210	SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)	S.X.	H.G.	Please select
0.35	48.5	1622185_at	CF209948	-	-	3e-2	At1g78915	binding	S.X.	H.G.	Please select
0.33	45.7	1614917_at	CF372079	hypothetical protein LOC100267340	-	4e+0	At5g60660	PIP2	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.9	98.6	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
5.9	98.6	GSM436410	V. riparia (VR, PI588259) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.3	97.2	GSM436412	V. riparia (VR, PI588259) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.1	96.9	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.7	96.2	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.7	96.2	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-3	42	1617440_at	CF373136	hypothetical protein LOC100247017	-	8e-2	At5g61470	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.04	8e-2	36	1606694_at	CB977917	hypothetical protein LOC100254974	-	1e+0	At4g14410	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.03	3e-1	34	1621458_at	CD714606	-	-	2e+0	At5g63065	-	C.G.	S.X.	Please select
0.03	3e-1	34	1621031_at	CD006724	hypothetical protein LOC100257804	-	3e-4	At3g11220	Paxneb protein-related	C.G.	S.X.	Please select
0.04	3e-1	34	1616309_at	CF206707.1	-	-	3e-23	At4g26840	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1)	C.G.	S.X.	Please select
0.04	3e-1	34	1615620_at	BQ794201	-	-	4e+0	At2g28930	APK1B	C.G.	S.X.	Please select
0.03	3e-1	34	1610294_at	CF373126	-	-	4e-13	At4g25835	AAA-type ATPase family protein	C.G.	S.X.	Please select
0.03	3e-1	34	1608858_at	CD714606	-	-	2e+0	At5g63065	-	C.G.	S.X.	Please select
0.04	3e-1	34	1608682_x_at	CF206707.1	-	-	3e-23	At4g26840	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	3e-4	46	Arabidopsis thaliana	At3g05800	819749	transcription factor	F:transcription factor activity;P:regulation of transcription;C:nucleus, chloroplast;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	2e-8	59	Glycine max	Gma.12465.1.S1_a_at	CD415130	-	-	5e-4	At3g17100	transcription factor	C.G.	S.X.	Please select
0.04	8e-3	40	Hordeum vulgare	EBro03_SQ006_M21_at	EBro03_SQ006_M21	-	-	9e-1	At5g67490	unknown protein	C.G.	S.X.	Please select
0.04	5e-4	46	Oryza sativa	Os03g0839800	AK110581.1	-	Conserved hypothetical protein	3e-2	At5g53030	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.17	2e-18	93	Populus trichocarpa	PtpAffx.17885.1.A1_a_at	CV260494	hypothetical protein	-	3e-5	At3g06590	transcription factor	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	7e-2	38	Triticum aestivum	Ta.30755.2.S1_x_at	CA702464	-	-	1e+0	At5g39170	unknown protein	C.G.	S.X.	Please select
0.03	7e-3	40	Zea mays	Zm.12295.2.S1_a_at	CD441109	stress responsive protein	-	2e-2	At2g39050	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage