Gene omics information

Query gene ID	1609428_at
Gene name	hypothetical protein LOC100257037
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	90.8	1609428_at	CF215282	hypothetical protein LOC100257037	-	1e-14	At1g79620	leucine-rich repeat transmembrane protein kinase, putative	S.X.	H.G.	Please select
0.61	83.2	1614235_at	CF512911	-	-	5e-10	At3g61150	HDG1 (HOMEODOMAIN GLABROUS 1)	S.X.	H.G.	Please select
0.57	79.8	1613787_at	CF512513	hypothetical protein LOC100250201	-	4e-4	At5g24105	AGP41 (ARABINOGALACTAN-PROTEIN 41)	S.X.	H.G.	Please select
0.53	75.2	1607831_at	BQ799075	hypothetical protein LOC100249242	-	8e-7	At3g03950	protein binding	S.X.	H.G.	Please select
0.53	75.2	1606978_s_at	CF207835	hypothetical protein LOC100242245	-	5e-1	At1g16680	DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative	S.X.	H.G.	Please select
0.46	66.5	1620672_at	CF207554	hypothetical protein LOC100254089	-	4e-11	At3g54350	emb1967 (embryo defective 1967)	S.X.	H.G.	Please select
0.45	64.6	1617357_at	CB921493	hypothetical protein LOC100263238	-	3e-25	At5g57410	unknown protein	S.X.	H.G.	Please select
0.45	64.6	1613050_at	CB971087	hypothetical protein LOC100248215	-	5e-4	At1g20470	auxin-responsive family protein	S.X.	H.G.	Please select
0.45	64.6	1620990_at	CF511811	hypothetical protein LOC100247103	-	1e-18	At1g19330	unknown protein	S.X.	H.G.	Please select
0.42	60.1	1615779_at	CF415379	hypothetical protein LOC100263332	-	2e+1	At5g16567	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.2	97.1	GSM436382	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM436383	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436397	V. riparia (VR, PI588259) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436419	V. riparia (VR, PI588259) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436362	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM436398	V. riparia (VR, PI588259) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM436400	V. riparia (VR, PI588259) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436361	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436418	V. riparia (VR, PI588259) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	8e-7	54	1606667_at	CA817499	hypothetical protein LOC100243297	-	2e-4	At3g55950	CCR3 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 3)	C.G.	S.X.	Please select
0.04	1e-2	40	1620258_at	AY427195.1	-	-	2e-2	At1g14370	APK2A (PROTEIN KINASE 2A)	C.G.	S.X.	Please select
0.04	1e-2	40	1607641_at	AY427195.1	-	-	2e-2	At1g14370	APK2A (PROTEIN KINASE 2A)	C.G.	S.X.	Please select
0.03	5e-2	38	1612516_at	CB976044	hypothetical protein LOC100252647	-	8e-9	At4g39400	BRI1 (BRASSINOSTEROID INSENSITIVE 1)	C.G.	S.X.	Please select
0.02	5e-2	38	1607524_at	CF372095	similar to receptor-like protein kinase 2	-	2e-19	At5g65700	BAM1 (BARELY ANY MERISTEM 1)	C.G.	S.X.	Please select
0.02	7e-1	34	1620869_at	BQ792836	-	-	2e-8	At5g13190	-	C.G.	S.X.	Please select
0.02	7e-1	34	1620504_at	CB342755	hypothetical protein LOC100255033	-	2e+0	At5g50790	nodulin MtN3 family protein	C.G.	S.X.	Please select
0.01	7e-1	34	1619468_at	AY043232.1	pectin methylesterase PME1	-	7e-8	At4g33220	enzyme inhibitor/ pectinesterase	C.G.	S.X.	Please select
0.02	7e-1	34	1618600_s_at	BQ792836	hypothetical protein LOC100242123	-	2e-8	At5g13190	-	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	1e-14	81	Arabidopsis thaliana	At1g79620	844301	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	4e-9	63	Glycine max	GmaAffx.16523.1.S1_at	CD411170	-	-	4e+0	At4g36740	ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)	C.G.	S.X.	Please select
0.05	1e-3	44	Hordeum vulgare	Contig14065_at	Contig14065	-	-	6e-8	At5g49770	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select
0.09	6e-24	113	Oryza sativa	Os01g0816600	NM_191078.1	-	Protein kinase domain containing protein	3e-7	At5g49780	ATP binding / kinase/ protein serine/threonine kinase	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.36	3e-142	506	Populus trichocarpa	PtpAffx.219819.1.S1_at	pmrna35948	hypothetical protein	-	8e-27	At1g79620	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e-1	38	Triticum aestivum	Ta.7235.2.S1_at	CA680907	-	-	1e-2	At1g06700	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.02	1e+0	34	Zea mays	ZmAffx.987.1.A1_at	AI834689	-	-	8e-1	At1g55546	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage