Gene omics information

Query gene ID	1609380_x_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	84.3	1609380_x_at	CF203033.1	-	-	8e-10	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	S.X.	H.G.	Please select
0.88	95.4	1614054_at	CF206745.1	-	-	4e-47	At2g27960	CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)	S.X.	H.G.	Please select
0.88	95.4	1618907_x_at	CF202612.1	-	-	4e+0	At5g17470	calmodulin-related protein, putative	S.X.	H.G.	Please select
0.80	93.6	1615753_at	CF207576	-	-	2e-11	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	S.X.	H.G.	Please select
0.80	93.6	1616230_x_at	CF202354.1	-	-	2e+1	At5g43510	-	S.X.	H.G.	Please select
0.67	87.9	1608322_x_at	CF205688.1	-	-	7e-1	At5g10890	myosin heavy chain-related	S.X.	H.G.	Please select
0.58	79.8	1609907_x_at	CF201896.1	-	-	8e+0	At5g50345	-	S.X.	H.G.	Please select
0.52	73.9	1620380_x_at	CF203025.1	-	-	1e-1	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.3	99.6	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
8.7	99.5	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
8.7	99.5	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
8.2	99.4	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
8.1	99.4	GSM147738	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	67
7.9	99.3	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
7.9	99.3	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
7.8	99.3	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
7.4	99.2	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
7.3	99.2	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.57	1e-92	337	1617102_at	CF202285.1	-	-	2e-12	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	C.G.	S.X.	Please select
0.81	3e-74	276	1619608_at	CF202280.1	-	-	2e-19	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	C.G.	S.X.	Please select
0.30	3e-74	276	1613936_x_at	CF568996	-	-	8e-24	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	C.G.	S.X.	Please select
0.81	3e-74	276	1612848_x_at	CF202280.1	-	-	2e-19	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	C.G.	S.X.	Please select
0.26	3e-65	246	1616847_s_at	CA816751	hypothetical protein LOC100267942	-	2e-12	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	C.G.	S.X.	Please select
0.25	5e-64	242	1610124_at	CA816957	hypothetical protein LOC100267942	-	7e-12	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	C.G.	S.X.	Please select
0.57	4e-55	212	1618020_x_at	CB972570	hypothetical protein LOC100267942	-	8e-4	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	C.G.	S.X.	Please select
0.64	6e-48	188	1620380_x_at	CF203025.1	-	-	1e-1	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	C.G.	S.X.	Please select
0.66	4e-37	153	1616430_at	CA810723	-	-	2e-7	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	8e-10	63	Arabidopsis thaliana	At5g38410	833828	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	F:ribulose-bisphosphate carboxylase activity;P:response to blue light, carbon utilization by fixation of carbon dioxide, response to red light, response to far red light;C:in 8 components;POB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	3e-4	46	Glycine max	Gma.289.1.S1_x_at	AF303941.1	ribulose-1,5-bisphosphate carboxylase small subunit rbcS2 /// ribulose-1,5-bisphosphate carboxylase small subunit /// ribulose-1,5-bisphosphate carboxylase small subunit	-	7e-34	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	C.G.	S.X.	Please select
0.05	9e-2	36	Hordeum vulgare	HM09E06r_at	HM09E06r	-	-	9e-10	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	C.G.	S.X.	Please select
0.02	6e+0	32	Oryza sativa	Os05g0520100	9633.m04144	-	MPPN domain containing protein	1e-1	At1g32100	PRR1 (PINORESINOL REDUCTASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	4e-3	42	Populus trichocarpa	PtpAffx.249.412.A1_at	CV282939	-	-	7e-34	At3g53430	60S ribosomal protein L12 (RPL12B)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.08	1e-2	40	Triticum aestivum	Ta.27923.2.S1_x_at	CK212552	small subunit	-	3e-14	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	C.G.	S.X.	Please select
0.05	5e+0	30	Zea mays	Zm.8881.1.S1_at	BM056113	Hypothetical protein LOC100192858	-	2e+0	At3g25545	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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