CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1609341_s_at

Gene name hypothetical protein LOC100265359

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 92.3 1609341_s_at CF202467.1 hypothetical protein LOC100265359 - 2e-3 At5g40630 ubiquitin family protein S.X. H.G.
0.80 93.6 1618973_s_at CF204369.1 hypothetical protein LOC100267103 - 1e+0 At3g61560 reticulon family protein (RTNLB6) S.X. H.G.
0.67 87.9 1615833_s_at CF202514.1 similar to putative polyubiquitin (UBQ10) - 5e-1 At5g03240 UBQ3 (POLYUBIQUITIN 3) S.X. H.G.
0.61 83.2 1607300_at CF206446.1 - - 9e-51 At2g47650 UXS4 (UDP-XYLOSE SYNTHASE 4) S.X. H.G.
0.55 77.3 1614011_x_at CF205848.1 - - 3e+0 At4g12990 unknown protein S.X. H.G.
0.55 77.3 1620264_x_at CF201907.1 - - 2e-1 At5g10860 CBS domain-containing protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.9 99.7 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
10.1 99.6 GSM147723 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 52
9.7 99.6 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
8.8 99.5 GSM147739 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 68
7.6 99.3 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40
7.5 99.2 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
7.4 99.2 GSM147720 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 49
7.3 99.2 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
7.2 99.1 GSM147729 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 58
7.0 99.1 GSM147727 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 56
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 4e-100 361 1612988_at CB978708 hypothetical protein LOC100265359 - 6e-29 At5g21090 leucine-rich repeat protein, putative C.G. S.X.
0.05 1e-4 44 1615356_at CF403414 hypothetical protein LOC100267033 - 3e-5 At3g53310 transcriptional factor B3 family protein C.G. S.X.
0.06 3e-2 36 1619104_s_at CD004014 hypothetical protein LOC100242520 - 1e-41 At3g23940 dehydratase family C.G. S.X.
0.02 3e-2 36 1615680_at CF403334 hypothetical protein LOC100265358 - 7e-72 At5g11880 diaminopimelate decarboxylase, putative / DAP carboxylase, putative C.G. S.X.
0.06 3e-2 36 1615102_at CD004014 hypothetical protein LOC100242520 - 1e-41 At3g23940 dehydratase family C.G. S.X.
0.03 5e-1 32 1618070_at CB977762 hypothetical protein LOC100252147 - 2e-5 At5g13860 ELC-Like (ELCH-like) C.G. S.X.
0.02 5e-1 32 1613908_at CF403483 hypothetical protein LOC100242426 - 3e-34 At1g49820 ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE) C.G. S.X.
0.03 5e-1 32 1613758_at CA817514 hypothetical protein LOC100261013 - 4e-32 At5g63670 SPT42 (SPT4 HOMOLOG 2) C.G. S.X.
0.06 5e-1 32 1612240_at CF414518 hypothetical protein LOC100263579 - 4e+0 At5g05990 mitochondrial glycoprotein family protein / MAM33 family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 2e-3 42 Arabidopsis thaliana At5g40630 834062 ubiquitin family protein F:molecular_function unknown;P:protein modification process;C:chloroplast;MPOBFV - - - C.G. S.X.
0.07 6e-7 54 Glycine max Gma.16820.1.A1_at X05652.1 glycinin - 2e-5 At5g67520 adenylylsulfate kinase, putative C.G. S.X.
0.06 1e-2 38 Hordeum vulgare Contig20736_at Contig20736 - - 2e-40 At4g26110 NAP1 C.G. S.X.
0.05 5e-2 38 Oryza sativa Os02g0178700 AK110943.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 5e-1 At2g40475 unknown protein C.G. S.X.
0.10 2e-4 46 Populus trichocarpa PtpAffx.224051.1.S1_x_at pmrna42286 hypothetical protein - 6e-1 At3g46900 COPT2 C.G. S.X.
0.08 3e-2 38 Triticum aestivum Ta.11515.3.S1_x_at CA696236 - - 3e+0 At3g26800 unknown protein C.G. S.X.
0.05 1e-2 38 Zea mays Zm.4415.1.A1_at BM080841 hypothetical protein LOC100274900 - 5e-3 At3g50550 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage