CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1609339_at

Gene name hypothetical protein LOC100249314

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.5 1609339_at CF518412 hypothetical protein LOC100249314 - 5e-12 At4g14900 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.73 90.8 1620920_at CB349109 hypothetical protein LOC100245710 - 6e-5 At1g70950 - S.X. H.G.
0.57 79.8 1613673_at CF215004 hypothetical protein LOC100255721 - 3e-10 At5g09620 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein S.X. H.G.
0.55 77.3 1607455_at CB975693 similar to 60S ribosomal protein L29 - 1e-18 At3g06700 60S ribosomal protein L29 (RPL29A) S.X. H.G.
0.46 66.5 1606835_at CF518331 hypothetical protein LOC100255512 - 1e+0 At4g38680 GRP2 (GLYCINE RICH PROTEIN 2) S.X. H.G.
0.42 60.1 1606502_at BQ797201 hypothetical protein LOC100266630 - 2e-96 At3g10330 transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2) S.X. H.G.
0.30 39.4 1607210_s_at CK138219.1 hypothetical protein LOC100266938 - 6e+0 At5g58900 myb family transcription factor S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.4 99.6 GSM436350 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
9.1 99.5 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
8.8 99.5 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
8.3 99.4 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
8.2 99.4 GSM436347 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
7.9 99.3 GSM436351 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
7.7 99.3 GSM436349 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
7.1 99.1 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
6.2 98.8 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
5.4 98.3 GSM436369 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e-1 34 1612362_at CF372908 hypothetical protein LOC100243667 - 4e-31 At4g00180 YAB3 (YABBY3) C.G. S.X.
0.04 1e+0 32 1622069_at CD801772 - - 2e+0 At1g74340 dolichol phosphate-mannose biosynthesis regulatory protein-related C.G. S.X.
0.04 1e+0 32 1615525_at CF211579 hypothetical protein LOC100263802 - 3e-4 At2g46330 AGP16 (ARABINOGALACTAN PROTEIN 16) C.G. S.X.
0.03 1e+0 32 1611738_at CA811108 hypothetical protein LOC100259968 - 8e-39 At5g14200 3-isopropylmalate dehydrogenase, chloroplast, putative C.G. S.X.
0.02 5e+0 30 1621526_at CF211422 hypothetical protein LOC100241013 - 1e-5 At3g61060 AtPP2-A13 (Arabidopsis thaliana phloem protein 2-A13) C.G. S.X.
0.02 5e+0 30 1621396_at CF514715 hypothetical protein LOC100243434 - 5e-13 At4g34000 ABF3 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3) C.G. S.X.
0.02 5e+0 30 1620484_at CD799248 - - 3e+0 At4g11760 LCR17 (Low-molecular-weight cysteine-rich 17) C.G. S.X.
0.02 5e+0 30 1620292_at CA817018 hypothetical protein LOC100264686 - 3e-1 At2g45434 unknown protein C.G. S.X.
0.02 5e+0 30 1617832_s_at CD801140 hypothetical protein LOC100268022 - 2e-2 At5g06980 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 5e-12 71 Arabidopsis thaliana At4g14900 827147 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOBV - - - C.G. S.X.
0.15 4e-7 56 Glycine max Gma.10897.1.S1_s_at BM519569 - - 6e-2 At1g07175 unknown protein C.G. S.X.
0.04 1e-1 36 Hordeum vulgare Contig7097_s_at Contig7097 - - 4e+0 At4g32280 IAA29 (INDOLE-3-ACETIC ACID INDUCIBLE 29) C.G. S.X.
0.03 3e-2 40 Oryza sativa Os01g0200700 AF001396.1 - Metallothionein-like protein type 3 (MT-3) 1e-9 At3g15353 MT3 (METALLOTHIONEIN 3) C.G. S.X.
0.11 3e-17 89 Populus trichocarpa Ptp.2570.1.S1_at CV263294 - - 4e-80 At3g22440 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.04 1e+0 34 Triticum aestivum Ta.17936.1.S1_at CA626126 - - 5e-2 At5g60615 - C.G. S.X.
0.03 2e+0 32 Zea mays ZmAffx.172.1.A1_at AI668238 - - 3e+0 Atmg00240 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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