Gene omics information

Query gene ID	1609302_at
Gene name	similar to somatic embryogenesis receptor kinase
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1609302_at	CB979609	similar to somatic embryogenesis receptor kinase	-	7e-14	At1g34210	SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)	S.X.	H.G.	Please select
0.74	91.0	1613351_at	CB972999	hypothetical protein LOC100252023	-	2e-1	At5g12970	C2 domain-containing protein	S.X.	H.G.	Please select
0.55	77.3	1606662_at	CB979542	similar to somatic embryogenesis receptor kinase	-	6e-59	At1g34210	SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)	S.X.	H.G.	Please select
0.48	68.8	1611382_at	CF212352	hypothetical protein LOC100264955	-	2e-6	At3g53850	-	S.X.	H.G.	Please select
0.45	64.6	1614917_at	CF372079	hypothetical protein LOC100267340	-	4e+0	At5g60660	PIP2	S.X.	H.G.	Please select
0.44	64.1	1622185_at	CF209948	-	-	3e-2	At1g78915	binding	S.X.	H.G.	Please select
0.42	60.1	1618126_at	CF213298	hypothetical protein LOC100261549	-	3e-8	At1g76660	-	S.X.	H.G.	Please select
0.40	57.7	1619974_at	CF415318	hypothetical protein LOC100250685	-	1e-3	At5g17690	TFL2 (TERMINAL FLOWER 2)	S.X.	H.G.	Please select
0.39	54.9	1620990_at	CF511811	hypothetical protein LOC100247103	-	1e-18	At1g19330	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.6	96.0	GSM436382	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.5	95.7	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM436355	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436361	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436412	V. riparia (VR, PI588259) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	4e-22	103	1617103_at	CF215647	hypothetical protein LOC100247340	-	1e-28	At4g33430	BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE)	C.G.	S.X.	Please select
0.10	1e-9	61	1610213_at	BQ798061	similar to somatic embryogenesis receptor-like kinase 3	-	8e-11	At4g33430	BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE)	C.G.	S.X.	Please select
0.12	1e-9	61	1606557_at	CB976051	similar to BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE); kinase	-	1e-9	At4g33430	BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE)	C.G.	S.X.	Please select
0.04	7e-2	36	1612286_at	CB981439	-	-	4e+0	At3g55252	-	C.G.	S.X.	Please select
0.04	7e-2	36	1611809_at	CB002684	-	-	8e-7	At4g12970	unknown protein	C.G.	S.X.	Please select
0.04	7e-2	36	1608038_at	CB002684	-	-	8e-7	At4g12970	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	34	1622770_at	CF209970	hypothetical protein LOC100259874	-	3e-22	At1g64390	AtGH9C2 (Arabidopsis thaliana glycosyl hydrolase 9C2)	C.G.	S.X.	Please select
0.02	3e-1	34	1619795_at	CF403136	similar to leucine-rich repeat family protein	-	1e-2	At1g62500	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.03	3e-1	34	1619604_at	CB975212	hypothetical protein LOC100251615 /// hypothetical protein LOC100256870	-	8e-2	At4g21350	PUB8 (PLANT U-BOX 8)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	7e-14	77	Arabidopsis thaliana	At1g34210	840320	SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)	Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.30	1e-37	157	Glycine max	Gma.10649.1.S1_at	BE659256	-	-	3e-48	At1g34210	SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)	C.G.	S.X.	Please select
0.18	2e-25	115	Hordeum vulgare	Contig20622_at	Contig20622	-	-	6e-12	At1g34210	SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)	C.G.	S.X.	Please select
0.07	4e-20	99	Oryza sativa	Os04g0457800	AK105892.1	-	Somatic embryogenesis receptor kinase 1	1e-49	At4g33430	BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	4e-50	198	Populus trichocarpa	PtpAffx.212403.1.S1_s_at	pmrna24297	hypothetical protein	-	4e-111	At1g71830	SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	7e-5	48	Triticum aestivum	TaAffx.111640.1.S1_at	CA636242	-	-	3e-1	At2g13800	SERK5 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 5)	C.G.	S.X.	Please select
0.08	3e-8	57	Zea mays	Zm.10062.1.A1_at	BM378648	hypothetical protein LOC100280233	-	4e-4	At5g16000	NIK1 (NSP-INTERACTING KINASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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