CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1609265_at

Gene name hypothetical protein LOC100255460

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.9 1609265_at CD800725 hypothetical protein LOC100255460 - 5e-2 At3g60530 zinc finger (GATA type) family protein S.X. H.G.
0.91 98.8 1622399_at CF206628.1 similar to DNA-binding protein - 2e-27 At4g31550 WRKY11 S.X. H.G.
0.83 94.6 1609171_at CA813062 hypothetical protein LOC100251782 - 2e-2 At1g07530 SCL14 (SCARECROW-LIKE 14) S.X. H.G.
0.67 87.9 1610064_at CB341653 similar to DNA-binding protein - 3e-19 At2g38470 WRKY33 S.X. H.G.
0.67 87.9 1611285_s_at CA809190 similar to DNA-binding protein - 3e-22 At4g31550 WRKY11 S.X. H.G.
0.55 77.3 1619985_at CD004602 hypothetical protein LOC100262198 - 3e-1 At1g07530 SCL14 (SCARECROW-LIKE 14) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.9 99.6 GSM436351 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
8.7 99.5 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
6.0 98.7 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
5.8 98.6 GSM436350 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
5.6 98.4 GSM436413 V. riparia (VR, PI588259) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
5.4 98.3 GSM436349 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
5.3 98.2 GSM436367 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.4 97.3 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.4 97.3 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.9 96.6 GSM436393 V. riparia (VR, PI588259) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 32 1622450_at CB970586 - - 5e-7 At2g45220 pectinesterase family protein C.G. S.X.
0.03 1e+0 32 1619009_at CD008864 - - 4e+0 At5g55640 unknown protein C.G. S.X.
0.03 1e+0 32 1618423_at CB973428 hypothetical protein LOC100251379 - 5e-126 At5g42020 BIP2 C.G. S.X.
0.03 1e+0 32 1615205_at CD008864 - - 4e+0 At5g55640 unknown protein C.G. S.X.
0.03 4e+0 30 1620243_at CF512451 hypothetical protein LOC100245436 - 1e+0 At3g05940 unknown protein C.G. S.X.
0.02 4e+0 30 1619925_at CA813994 hypothetical protein LOC100263360 - 4e-1 At1g72360 ethylene-responsive element-binding protein, putative C.G. S.X.
0.02 4e+0 30 1612154_at CB970048 hypothetical protein LOC100255394 - 1e-74 At1g79500 2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA) C.G. S.X.
0.02 4e+0 30 1611670_at BQ797758 hypothetical protein LOC100241885 - 9e-70 At5g54750 transport protein particle (TRAPP) component Bet3, putative C.G. S.X.
0.02 4e+0 30 1610794_at CB970276 hypothetical protein LOC100254003 - 2e-46 At1g20330 SMT2 (STEROL METHYLTRANSFERASE 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 5e-2 38 Arabidopsis thaliana At3g60530 825224 zinc finger (GATA type) family protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOM - - - C.G. S.X.
0.10 2e-11 69 Glycine max Gma.1653.1.A1_at BE190451 - - 3e-11 At3g54810 zinc finger (GATA type) family protein C.G. S.X.
0.10 7e+0 30 Hordeum vulgare HS04O06u_at HS04O06u - - 1e-8 At5g66320 zinc finger (GATA type) family protein C.G. S.X.
0.08 2e+0 34 Oryza sativa Os10g0557600 NM_197709.1 - AtGATA-3 protein (GATA transcription factor 3) 3e-21 At4g32890 zinc finger (GATA type) family protein C.G. S.X.
0.12 9e-14 77 Populus trichocarpa Ptp.4992.1.S1_at CV272923 hypothetical protein - 5e-2 At3g51080 zinc finger (GATA type) family protein C.G. S.X.
0.08 4e-3 42 Triticum aestivum Ta.9252.1.S1_x_at BQ162172 - - 9e-2 At1g08000 zinc finger (GATA type) family protein C.G. S.X.
0.03 6e+0 30 Zea mays Zm.4840.1.A1_s_at CD953132 peroxisomal-coenzyme A synthetase - 3e-1 At3g48990 AMP-dependent synthetase and ligase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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