Gene omics information

Query gene ID	1609252_at
Gene name	hypothetical protein LOC100241396
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	91.3	1609252_at	CF212360	hypothetical protein LOC100241396	-	5e-3	At5g53270	seed maturation family protein	S.X.	H.G.	Please select
0.64	84.7	1622020_s_at	BQ794212	hypothetical protein LOC100261607	-	1e-8	At4g20260	DREPP plasma membrane polypeptide family protein	S.X.	H.G.	Please select
0.61	83.2	1613088_at	CB975785	hypothetical protein LOC100262569	-	5e-1	At5g24660	LSU2 (RESPONSE TO LOW SULFUR 2)	S.X.	H.G.	Please select
0.55	77.3	1616564_at	CB979976	-	-	4e-42	At3g26618	ERF1-3 (eukaryotic release factor 1-3)	S.X.	H.G.	Please select
0.50	72.7	1620799_at	CF212439	hypothetical protein LOC100241396	-	2e-2	At4g35987	unknown protein	S.X.	H.G.	Please select
0.50	72.7	1615750_at	CD800994	hypothetical protein LOC100261431	-	2e+0	At5g58787	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.46	66.5	1622431_at	CF371864	hypothetical protein LOC100264392	-	8e-1	At3g06895	unknown protein	S.X.	H.G.	Please select
0.44	64.1	1612181_at	CF518786	hypothetical protein LOC100241990	-	7e-6	At4g14100	transferase, transferring glycosyl groups	S.X.	H.G.	Please select
0.38	53.6	1614761_at	CD797278	hypothetical protein LOC100266857	-	4e+0	At1g69920	ATGSTU12 (GLUTATHIONE S-TRANSFERASE TAU 12)	S.X.	H.G.	Please select
0.36	50.7	1621508_at	CB005665	hypothetical protein LOC100260203	-	3e-20	At5g35180	phosphoinositide binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.5	99.7	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
9.1	99.5	GSM287886	Green soft berry C22 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
7.8	99.3	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
7.3	99.2	GSM287879	Green hard berry C19 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
7.0	99.1	GSM287871	Green hard berry C4 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
6.9	99.1	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
6.8	99.0	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
6.7	99.0	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
6.5	98.9	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
6.5	98.9	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-2	38	1615662_at	CD005936	-	-	1e+0	At5g65080	MAF5 (MADS AFFECTING FLOWERING 5)	C.G.	S.X.	Please select
0.03	2e-2	38	1611874_at	CD005936	-	-	1e+0	At5g65080	MAF5 (MADS AFFECTING FLOWERING 5)	C.G.	S.X.	Please select
0.03	4e-1	34	1619637_at	CF203984.1	-	-	4e+0	At5g08420	RNA binding	C.G.	S.X.	Please select
0.05	4e-1	34	1618309_at	CB968982	AP1-like protein	-	6e+0	At2g02050	NADH-ubiquinone oxidoreductase B18 subunit, putative	C.G.	S.X.	Please select
0.02	4e-1	34	1614152_at	CF213905	hypothetical protein LOC100253976	-	6e-78	At5g09650	AtPPa6 (Arabidopsis thaliana pyrophosphorylase 6)	C.G.	S.X.	Please select
0.02	2e+0	32	1619583_at	CK136907.1	hypothetical protein LOC100263565	-	2e-5	At3g19970	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	1614161_at	CD011943	-	-	4e-4	At5g40070	-	C.G.	S.X.	Please select
0.02	2e+0	32	1612335_at	CF207303	hypothetical protein LOC100259681	-	4e-7	At3g60070	-	C.G.	S.X.	Please select
0.02	2e+0	32	1611790_at	CF205992.1	-	-	3e-5	At1g61340	F-box family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-3	42	Arabidopsis thaliana	At5g53270	835408	seed maturation family protein	F:molecular_function unknown;P:multicellular organismal development;C:cellular_component unknown;PM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e-1	36	Glycine max	GmaAffx.19925.1.S1_at	BE657749	-	-	3e-1	At3g56790	RNA splicing factor-related	C.G.	S.X.	Please select
0.03	1e+1	30	Hordeum vulgare	Contig25677_at	Contig25677	-	-	8e-2	At1g49010	myb family transcription factor	C.G.	S.X.	Please select
0.02	6e-4	46	Oryza sativa	Os11g0174700	9639.m00675	-	-	5e-2	At4g33740	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e+0	32	Populus trichocarpa	PtpAffx.80282.1.S1_at	DN493986	hypothetical protein	-	3e+0	At3g03870	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	34	Triticum aestivum	TaAffx.52772.1.S1_at	CA701755	-	-	7e-2	At4g21610	LOL2 (LSD ONE LIKE 2)	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	Zm.10133.2.S1_at	AI833460	-	-	5e-1	At3g46870	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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