CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1609250_at

Gene name SINA1p

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.9 1609250_at Y18471.1 SINA1p - 2e-60 At3g61790 seven in absentia (SINA) family protein S.X. H.G.
0.60 81.9 1608021_at BQ796920 hypothetical protein LOC100250690 - 6e-1 At3g46620 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.57 79.8 1606811_at BQ797419 hypothetical protein LOC100241198 - 5e-123 At2g30980 ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta) S.X. H.G.
0.44 64.1 1620587_at CF373296 hypothetical protein LOC100258035 - 2e-2 At1g08970 NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9) S.X. H.G.
0.33 45.7 1611523_at CD801109 hypothetical protein LOC100267138 - 6e-16 At3g21865 PEX22 (peroxin 22) S.X. H.G.
0.25 30.5 1608865_at CF514121 hypothetical protein LOC100259987 - 7e-90 At5g38480 GRF3 (GENERAL REGULATORY FACTOR 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.8 93.4 GSM436362 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436359 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436363 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436382 Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436360 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436383 Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436361 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436355 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM287869 Green hard berry C3 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 1e-27 123 1612165_at CD799201 hypothetical protein LOC100252009 - 9e-17 At5g53360 seven in absentia (SINA) family protein C.G. S.X.
0.16 2e-11 69 1621811_at CB341999 SINA2p - 5e-48 At3g58040 SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2) C.G. S.X.
0.02 5e-2 38 1617516_at CB974430 hypothetical protein LOC100252031 - 6e-3 At5g54490 PBP1 (PINOID-BINDING PROTEIN 1) C.G. S.X.
0.02 5e-2 38 1614804_at CB968667 - - 4e+0 At5g39850 40S ribosomal protein S9 (RPS9C) C.G. S.X.
0.02 2e-1 36 1621896_at CF604980 hypothetical protein LOC100265858 - 1e-9 At3g05100 - C.G. S.X.
0.02 2e-1 36 1621435_s_at CF515294 hypothetical protein LOC100253802 - 2e+0 At2g18040 PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1) C.G. S.X.
0.02 2e-1 36 1618241_at CF513295 hypothetical protein LOC100252311 - 6e-28 At5g43130 TAF4 (TBP-ASSOCIATED FACTOR 4) C.G. S.X.
0.02 2e-1 36 1617574_at CF403207 hypothetical protein LOC100253802 - 4e-1 At3g57770 protein kinase, putative C.G. S.X.
0.02 2e-1 36 1617572_at CB918599 hypothetical protein LOC100251967 - 3e-17 At3g61460 BRH1 (BRASSINOSTEROID-RESPONSIVE RING-H2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.38 2e-60 234 Arabidopsis thaliana At3g61790 825352 seven in absentia (SINA) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination;C:nucleus;MPOF - - - C.G. S.X.
0.33 5e-24 113 Glycine max Gma.5088.2.S1_at CA937805 - - 4e-36 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.39 8e-73 274 Hordeum vulgare Contig14919_at Contig14919 - - 8e-34 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.44 3e-88 327 Oryza sativa Os01g0234900 NM_188653.1 - Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven inabsentia homolog 5). Splice isoform 2 1e-38 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.44 1e-114 414 Populus trichocarpa PtpAffx.283.6.S1_a_at CV229539 hypothetical protein - 8e-47 At4g27880 seven in absentia (SINA) family protein C.G. S.X.
0.36 4e-89 329 Triticum aestivum Ta.29541.1.S1_at CK196948 - - 3e-50 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
0.37 5e-37 155 Zea mays Zm.13813.1.S1_at CF011226 hypothetical protein LOC100272771 - 7e-26 At3g61790 seven in absentia (SINA) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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