Gene omics information

Query gene ID	1609224_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1609224_at	CF203372.1	-	-	4e+0	At5g54745	DegP protease family	S.X.	H.G.	Please select
0.91	98.8	1617743_at	CF201643.1	-	-	2e-12	At1g52870	peroxisomal membrane protein-related	S.X.	H.G.	Please select
0.83	94.6	1611368_at	CF203753.1	-	-	6e-18	At4g35090	CAT2 (CATALASE 2)	S.X.	H.G.	Please select
0.80	93.6	1618231_at	AF141642.1	-	-	8e-50	At2g37170	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2)	S.X.	H.G.	Please select
0.67	87.9	1617744_x_at	CF205571.1	-	-	2e+0	At1g03660	-	S.X.	H.G.	Please select
0.61	83.2	1616794_at	CF205534.1	-	-	3e-26	At3g58680	MBF1B (MULTIPROTEIN BRIDGING FACTOR 1B)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.6	100.0	GSM436417	V. riparia (VR, PI588259) SD, 13h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
23.4	100.0	GSM436415	V. riparia (VR, PI588259) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
13.6	99.8	GSM436410	V. riparia (VR, PI588259) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
10.5	99.7	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
8.6	99.5	GSM436421	V. riparia (VR, PI588259) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
7.5	99.2	GSM436412	V. riparia (VR, PI588259) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
7.4	99.2	GSM436416	V. riparia (VR, PI588259) SD, 13h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
7.3	99.2	GSM436399	V. riparia (VR, PI588259) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
7.1	99.1	GSM436419	V. riparia (VR, PI588259) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
6.8	99.0	GSM436418	V. riparia (VR, PI588259) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.74	5e-154	541	1614613_at	CF515694	hypothetical protein LOC100257387	-	6e-3	At2g45140	PVA12 (PLANT VAP HOMOLOG 12)	C.G.	S.X.	Please select
0.74	5e-154	541	1614376_s_at	CF515694	hypothetical protein LOC100257387	-	6e-3	At2g45140	PVA12 (PLANT VAP HOMOLOG 12)	C.G.	S.X.	Please select
0.02	3e-1	34	1610498_at	BQ794434	-	-	7e-62	At3g21215	RNA-binding protein, putative	C.G.	S.X.	Please select
0.03	1e+0	32	1615938_at	CF208490	hypothetical protein LOC100244729	-	8e-51	At5g62700	TUB3	C.G.	S.X.	Please select
0.03	1e+0	32	1610601_at	CF512111	hypothetical protein LOC100267859	-	1e+0	At2g12905	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	1621721_at	CD718881	hypothetical protein LOC100248049	-	3e-17	At5g08320	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	1621714_at	CF202956.1	-	-	6e+0	At4g27810	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	1620555_at	CF205145.1	-	-	8e-64	At5g05580	FAD8 (FATTY ACID DESATURASE 8)	C.G.	S.X.	Please select
0.03	5e+0	30	1619777_at	CB915313	hypothetical protein LOC100257839	-	1e+0	At2g30410	KIS (KIESEL)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At5g54745	835564	DegP protease family	F:catalytic activity, serine-type endopeptidase activity;P:proteolysis;C:endomembrane system;BOPMA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e+0	32	Glycine max	GmaAffx.38283.2.S1_at	CA801099	-	-	2e-1	At1g56085	-	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	HVSMEc0011O16r2_at	HVSMEc0011O16r2	-	-	3e-1	At1g09932	phosphoglycerate/bisphosphoglycerate mutase-related	C.G.	S.X.	Please select
0.05	8e+0	32	Oryza sativa	Os11g0212100	9639.m01004	-	-	2e+0	At3g22160	VQ motif-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	1e-7	57	Populus trichocarpa	PtpAffx.30565.1.A1_at	CV269996	hypothetical protein	-	9e-11	At2g45140	PVA12 (PLANT VAP HOMOLOG 12)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	TaAffx.78883.1.S1_at	CA725261	-	-	3e+0	At3g60760	unknown protein	C.G.	S.X.	Please select
0.04	7e-3	40	Zea mays	Zm.7739.1.A1_at	BQ538356	-	-	6e+0	At1g49260	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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