CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1609218_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.56 79.4 1609218_at BM437324 - - 3e-1 At4g40030 histone H3.2 S.X. H.G.
0.63 84.3 1609744_at CF203760.1 hypothetical protein LOC100240811 /// hypothetical protein LOC100263073 - 2e+0 At3g42630 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.57 79.8 1615458_at CB969727 hypothetical protein LOC100255664 - 2e+0 At5g16490 RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4) S.X. H.G.
0.55 77.3 1622670_s_at CF207059.1 hypothetical protein LOC100242012 - 1e+1 At5g05590 PAI2 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2) S.X. H.G.
0.48 68.8 1618260_s_at CD799434 hypothetical protein LOC100254518 - 3e-1 At1g73830 BEE3 (BR ENHANCED EXPRESSION 3) S.X. H.G.
0.47 67.7 1618355_at CB837772 - - 1e+0 At2g16750 protein kinase family protein S.X. H.G.
0.41 58.7 1616445_at CD716014 hypothetical protein LOC100262839 - 1e+0 At5g67060 HEC1 (HECATE 1) S.X. H.G.
0.35 48.5 1615581_at CB973651 - - 1e+0 At1g29540 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
54.4 100.0 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
42.7 100.0 GSM299456 C_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
25.9 100.0 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
10.6 99.7 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.1 98.1 GSM299452 B_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.0 98.0 GSM299460 D_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.6 97.6 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2 94.9 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM299458 D_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3 90.7 GSM436413 V. riparia (VR, PI588259) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 9e-11 65 1621663_at CF211908 - - 5e-1 At4g04650 - C.G. S.X.
0.04 4e-10 63 1622195_at CB969266 hypothetical protein LOC100248937 - 3e-15 At4g07990 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.04 4e-10 63 1621610_at CF372731 - - 8e-6 At4g28240 wound-responsive protein-related C.G. S.X.
0.03 4e-10 63 1607341_at CB970018 hypothetical protein LOC100242887 - 1e-8 At3g16370 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.04 4e-10 63 1606701_s_at CF514905 hypothetical protein LOC100260907 - 2e-28 At5g23750 remorin family protein C.G. S.X.
0.04 4e-10 63 1606513_s_at CB981864 similar to Stress-related protein - 2e+0 At2g47780 rubber elongation factor (REF) protein-related C.G. S.X.
0.06 1e-9 61 1618494_at CF405291 hypothetical protein LOC100264126 - 7e-5 At1g18010 - C.G. S.X.
0.04 1e-9 61 1616169_at CD802101 hypothetical protein LOC100244482 - 2e-56 At1g72680 cinnamyl-alcohol dehydrogenase, putative C.G. S.X.
0.04 1e-9 61 1614437_at CF406008 - - 5e-1 At3g25882 NIMIN-2 (NIM1-INTERACTING 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-1 36 Arabidopsis thaliana At4g40030 830164 histone H3.2 F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPO - - - C.G. S.X.
0.03 2e+0 34 Glycine max HgAffx.11568.1.S1_at CB934882 - - 5e+0 At5g59845 gibberellin-regulated family protein C.G. S.X.
0.02 2e+0 32 Hordeum vulgare Contig5955_at Contig5955 - - 2e+0 At1g05990 calcium-binding protein, putative C.G. S.X.
0.03 4e-2 40 Oryza sativa Os05g0427900 AK067448.1 - Heat shock protein DnaJ family protein 4e-1 At4g39410 WRKY13 C.G. S.X.
0.04 2e+0 34 Populus trichocarpa PtpAffx.211844.1.S1_at pmrna23243 hypothetical protein - 8e-1 At5g55140 ribosomal protein L30 family protein C.G. S.X.
0.05 8e-8 57 Triticum aestivum Ta.16933.1.S1_at CA615409 - - 5e+0 At3g44940 unknown protein C.G. S.X.
0.03 5e-1 34 Zea mays Zm.7068.2.S1_at CD960009 - - 3e-2 At1g24120 ARL1 (ARG1-LIKE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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