Gene omics information

Query gene ID	1609191_s_at
Gene name	hypothetical protein LOC100258056
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1609191_s_at	CB978023	hypothetical protein LOC100258056	-	0	At5g26751	ATSK11	S.X.	H.G.	Please select
0.77	92.3	1606368_s_at	CF208516	actin 1	-	0	At5g09810	ACT7 (ACTIN 7)	S.X.	H.G.	Please select
0.77	92.3	AFFX-Vvi-actin-3_s_at	-	actin 1	-	0			S.X.	H.G.	Please select
0.71	89.5	AFFX-Vvi-actin-3_c6_s_at	-	actin 1	-	0			S.X.	H.G.	Please select
0.67	87.9	AFFX-Vvi-actin-3_c7_s_at	-	actin 1	-	0			S.X.	H.G.	Please select
0.55	77.3	1611412_at	CF517248	hypothetical protein LOC100244694	-	2e+0	At5g37480	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
1.8	86.0	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
1.7	84.7	GSM147719	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	48
1.7	84.7	GSM147730	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	59
1.6	83.3	GSM147731	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	60
1.6	83.3	GSM436415	V. riparia (VR, PI588259) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
1.6	83.3	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
1.6	83.3	GSM436421	V. riparia (VR, PI588259) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.39	2e-125	448	1618465_at	CB918507	hypothetical protein LOC100252099	-	2e-39	At5g14640	SK13 (SHAGGY-LIKE KINASE 13)	C.G.	S.X.	Please select
0.20	3e-47	188	1622161_at	CB982729	hypothetical protein LOC100252299	-	3e-101	At1g57870	ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42)	C.G.	S.X.	Please select
0.18	2e-42	173	1620375_at	CA814054	hypothetical protein LOC100252099	-	3e-13	At3g05840	ATSK12	C.G.	S.X.	Please select
0.29	1e-40	167	1621171_at	CF568972	-	-	2e-85	At5g14640	SK13 (SHAGGY-LIKE KINASE 13)	C.G.	S.X.	Please select
0.21	4e-28	125	1615576_at	CB970198	-	-	1e-147	At1g09840	ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)	C.G.	S.X.	Please select
0.20	2e-24	113	1622824_at	BQ794106	hypothetical protein LOC100266096	-	5e-73	At4g00720	ATSK32 (SHAGGY-LIKE PROTEIN KINASE 32)	C.G.	S.X.	Please select
0.19	6e-24	111	1612428_at	BQ798883	similar to shaggy-related protein kinase delta / ASK-delta / ASK-dzeta (ASK4)	-	2e-81	At4g18710	BIN2 (BRASSINOSTEROID-INSENSITIVE 2)	C.G.	S.X.	Please select
0.14	8e-14	77	1606811_at	BQ797419	hypothetical protein LOC100241198	-	5e-123	At2g30980	ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta)	C.G.	S.X.	Please select
0.01	7e-2	38	1621342_at	CF206330.1	-	-	2e-3	At5g38710	proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.53	0	638	Arabidopsis thaliana	At5g26751	832733	ATSK11	encodes a SHAGGY-related kinase involved in meristem organization.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.56	0	882	Glycine max	Gma.11129.1.S1_at	BE657610	-	-	6e-119	At3g05840	ATSK12	C.G.	S.X.	Please select
0.44	3e-135	482	Hordeum vulgare	Contig5540_at	Contig5540	-	-	1e-52	At3g05840	ATSK12	C.G.	S.X.	Please select
0.40	5e-112	406	Oryza sativa	Os01g0252100	AK068737.1	-	Glycogen synthase kinase-3 homolog MsK-3 (EC2.7.1.-)	1e-49	At5g14640	SK13 (SHAGGY-LIKE KINASE 13)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.59	0	1025	Populus trichocarpa	Ptp.4916.1.S1_s_at	CV270159	hypothetical protein	-	6e-165	At5g26751	ATSK11	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.42	4e-114	412	Triticum aestivum	Ta.3003.1.S1_x_at	BE398996	-	-	3e-44	At5g26751	ATSK11	C.G.	S.X.	Please select
0.39	4e-115	414	Zea mays	Zm.6802.2.S1_at	AI612473	glycogen synthase kinase-3 MsK-3	-	2e-42	At5g14640	SK13 (SHAGGY-LIKE KINASE 13)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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