CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1609171_at

Gene name hypothetical protein LOC100251782

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1609171_at CA813062 hypothetical protein LOC100251782 - 2e-2 At1g07530 SCL14 (SCARECROW-LIKE 14) S.X. H.G.
0.73 90.8 1622399_at CF206628.1 similar to DNA-binding protein - 2e-27 At4g31550 WRKY11 S.X. H.G.
0.73 90.8 1619985_at CD004602 hypothetical protein LOC100262198 - 3e-1 At1g07530 SCL14 (SCARECROW-LIKE 14) S.X. H.G.
0.57 79.8 1615012_s_at CB341464 hypothetical protein LOC100251782 - 1e+0 At5g25360 unknown protein S.X. H.G.
0.53 75.2 1610064_at CB341653 similar to DNA-binding protein - 3e-19 At2g38470 WRKY33 S.X. H.G.
0.53 75.2 1611285_s_at CA809190 similar to DNA-binding protein - 3e-22 At4g31550 WRKY11 S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.9 99.1 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
5.8 98.6 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
5.4 98.3 GSM436351 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
5.4 98.3 GSM436427 V. riparia (VR, PI588259) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
5.0 98.0 GSM436393 V. riparia (VR, PI588259) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
5.0 98.0 GSM436413 V. riparia (VR, PI588259) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.7 97.7 GSM436364 Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.2 97.1 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
4.1 96.9 GSM436417 V. riparia (VR, PI588259) SD, 13h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.7 96.2 GSM436367 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 2e-63 240 1616776_at CF201914.1 - - 1e+0 At5g25360 unknown protein C.G. S.X.
0.09 3e-16 83 1620817_at CB341464 hypothetical protein LOC100251782 - 1e+0 At5g25360 unknown protein C.G. S.X.
0.09 3e-16 83 1615012_s_at CB341464 hypothetical protein LOC100251782 - 1e+0 At5g25360 unknown protein C.G. S.X.
0.11 9e-14 75 1613611_at CF209351 hypothetical protein LOC100252795 - 1e-11 At2g37650 scarecrow-like transcription factor 9 (SCL9) C.G. S.X.
0.09 3e-4 44 1612489_at CD717610 - - 9e-2 At4g17230 SCL13 (Scarecrow-like 13) C.G. S.X.
0.09 3e-4 44 1608709_at CD717610 hypothetical protein LOC100267399 - 9e-2 At4g17230 SCL13 (Scarecrow-like 13) C.G. S.X.
0.08 2e-2 38 1619985_at CD004602 hypothetical protein LOC100262198 - 3e-1 At1g07530 SCL14 (SCARECROW-LIKE 14) C.G. S.X.
0.08 2e-2 38 1607345_at CD004602 - - 3e-1 At1g07530 SCL14 (SCARECROW-LIKE 14) C.G. S.X.
0.02 5e+0 30 1622063_s_at CA814656 hypothetical protein LOC100262414 - 3e-27 At4g18040 EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-2 40 Arabidopsis thaliana At1g07530 837267 SCL14 (SCARECROW-LIKE 14) Encodes a member of the GRAS family of transcription factors. The protein interacts with the TGA2 transcription factor and affects the transcription of stress-responsive genes. The protein is found in the nucleus and is also exported to the cytoplasm. - - - C.G. S.X.
0.04 2e-6 54 Glycine max GmaAffx.81793.1.S1_at BM188266 - - 1e-1 At1g07520 scarecrow transcription factor family protein C.G. S.X.
0.06 1e-7 56 Hordeum vulgare Contig12925_s_at Contig12925 - - 2e-3 At1g07530 SCL14 (SCARECROW-LIKE 14) C.G. S.X.
0.03 5e-1 36 Oryza sativa Os10g0369600 AK058352.1 - SCARECROW gene regulator-like (Phytochrome Asignal transduction 1 protein) 1e-8 At4g17230 SCL13 (Scarecrow-like 13) C.G. S.X.
0.22 2e-11 69 Populus trichocarpa PtpAffx.200782.1.S1_at pmrna1513 GRAS family transcription factor - 6e-7 At3g46600 scarecrow transcription factor family protein C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.84103.1.S1_at CA644661 - - 3e-1 At1g75190 unknown protein C.G. S.X.
0.03 2e+0 32 Zea mays ZmAffx.1421.1.S1_at 40794996-96 - - 3e+0 At5g52270 vesicle transport protein-related C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage