Gene omics information

Query gene ID	1609125_at
Gene name	hypothetical protein LOC100250703
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	72.7	1609125_at	CF373253	hypothetical protein LOC100250703	-	3e-10	At4g15000	60S ribosomal protein L27 (RPL27C)	S.X.	H.G.	Please select
0.46	66.5	1617864_at	BQ797843	hypothetical protein LOC100262824	-	4e-64	At5g39740	60S ribosomal protein L5 (RPL5B)	S.X.	H.G.	Please select
0.44	64.1	1609318_at	CF516798	hypothetical protein LOC100250040	-	4e-47	At1g70600	structural constituent of ribosome	S.X.	H.G.	Please select
0.23	27.5	1612626_at	CF211601	hypothetical protein LOC100265729	-	1e-47	At2g39390	60S ribosomal protein L35 (RPL35B)	S.X.	H.G.	Please select
0.22	25.6	1621637_at	BQ794462	hypothetical protein LOC100266121	-	3e-36	At3g51800	ATG2	S.X.	H.G.	Please select
0.14	14.4	1616916_a_at	CB346827	hypothetical protein LOC100251636	-	7e-27	At5g02450	60S ribosomal protein L36 (RPL36C)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.6	97.6	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.9	96.6	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.9	96.6	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.7	96.2	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.4	95.5	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2	94.9	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.0	94.2	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9	93.8	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.8	93.4	GSM287871	Green hard berry C4 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.60	7e-86	315	1620794_at	CF568783	-	-	3e-13	At4g15000	60S ribosomal protein L27 (RPL27C)	C.G.	S.X.	Please select
0.50	6e-77	286	1610389_s_at	CA818339	hypothetical protein LOC100261052	-	1e-13	At4g15000	60S ribosomal protein L27 (RPL27C)	C.G.	S.X.	Please select
0.51	3e-72	270	1610244_x_at	CF204556.1	hypothetical protein LOC100261052	-	1e-3	At4g15000	60S ribosomal protein L27 (RPL27C)	C.G.	S.X.	Please select
0.02	1e+0	32	1619664_at	AJ237992.1	ripening-related bZIP protein-like	-	7e-14	At4g34000	ABF3 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3)	C.G.	S.X.	Please select
0.02	1e+0	32	1610500_at	CB976882	hypothetical protein LOC100255820	-	2e-78	At4g00740	dehydration-responsive protein-related	C.G.	S.X.	Please select
0.02	1e+0	32	1609386_at	BQ798112	hypothetical protein LOC100248340	-	4e-1	At5g14030	translocon-associated protein beta (TRAPB) family protein	C.G.	S.X.	Please select
0.02	6e+0	30	1622803_at	BQ797421	hypothetical protein LOC100245108	-	8e-24	At5g13510	ribosomal protein L10 family protein	C.G.	S.X.	Please select
0.02	6e+0	30	1621881_at	CF404940	hypothetical protein LOC100245111	-	3e-52	At4g27450	unknown protein	C.G.	S.X.	Please select
0.01	6e+0	30	1621338_s_at	CF216064	hypothetical protein LOC100261523	-	6e-11	At3g60240	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	3e-10	65	Arabidopsis thaliana	At4g15000	827159	60S ribosomal protein L27 (RPL27C)	F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, intracellular;MOFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.43	1e-19	97	Glycine max	Gma.3019.1.S1_at	CD391304	-	-	4e-19	At3g22230	60S ribosomal protein L27 (RPL27B)	C.G.	S.X.	Please select
0.30	6e-44	176	Hordeum vulgare	Contig2340_at	Contig2340	-	-	7e-12	At4g15000	60S ribosomal protein L27 (RPL27C)	C.G.	S.X.	Please select
0.35	5e-54	212	Oryza sativa	Os02g0284600	AK121593.1	-	60S ribosomal protein L27	3e-11	At4g15000	60S ribosomal protein L27 (RPL27C)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.25	7e-9	61	Populus trichocarpa	Ptp.1424.1.S1_s_at	CV250396	hypothetical protein	-	3e-14	At3g22230	60S ribosomal protein L27 (RPL27B)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.34	1e-25	117	Triticum aestivum	TaAffx.42641.1.S1_at	BE492356	-	-	1e-6	At3g22230	60S ribosomal protein L27 (RPL27B)	C.G.	S.X.	Please select
0.40	3e-64	244	Zea mays	Zm.14497.8.A1_x_at	CO527469	60S ribosomal protein L27 /// 60S ribosomal protein L27	-	2e-6	At3g22230	60S ribosomal protein L27 (RPL27B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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