Gene omics information

Query gene ID	1609106_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.93	99.2	1609106_at	CD006725	-	-	6e-6	At1g07290	nucleotide-sugar transmembrane transporter	S.X.	H.G.	Please select
0.43	61.5	1621341_at	CA814621	-	-	2e+0	At5g42020	BIP2	S.X.	H.G.	Please select
0.36	50.7	1610212_at	CF203864.1	-	-	1e+0	At5g13090	unknown protein	S.X.	H.G.	Please select
0.32	43.1	1614246_at	CF202512.1	-	-	3e-4	At1g23480	ATCSLA03 (CELLULOSE SYNTHASE-LIKE A3)	S.X.	H.G.	Please select
0.25	30.5	1616430_at	CA810723	-	-	2e-7	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	S.X.	H.G.	Please select
0.13	13.3	1610687_at	CF511229	-	-	1e-35	At2g37680	-	S.X.	H.G.	Please select
0.12	12.1	1620678_at	CB837115	-	-	4e-13	At4g01690	PPOX	S.X.	H.G.	Please select
0.09	9.4	1617776_at	CF512941	-	-	1e+0	At5g23440	FTRA1 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.7	99.9	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
10.8	99.7	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
8.8	99.5	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
8.3	99.4	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
7.6	99.3	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
6.8	99.0	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
6.1	98.7	GSM147676	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	5
5.0	98.0	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38
4.9	97.9	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.6	97.6	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	0	759	1608874_at	CD006725	-	-	6e-6	At1g07290	nucleotide-sugar transmembrane transporter	C.G.	S.X.	Please select
0.03	1e-1	36	1620131_at	CF415368	-	-	2e-10	At3g01940	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1622757_at	CF510915	hypothetical protein LOC100253200	-	8e-6	At1g65580	FRA3 (FRAGILE FIBER3)	C.G.	S.X.	Please select
0.02	2e+0	32	1621408_at	BQ798831	hypothetical protein LOC100244724	-	5e+0	Atmg01370	-	C.G.	S.X.	Please select
0.03	2e+0	32	1619006_at	CF512135	hypothetical protein LOC100254273	-	1e+0	At1g68490	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1617376_at	BQ792638	hypothetical protein LOC100250911	-	2e-3	At4g12760	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1614453_at	BQ798141	hypothetical protein LOC100259029	-	2e+0	At5g18910	protein kinase family protein	C.G.	S.X.	Please select
0.03	2e+0	32	1613573_at	CF609267	hypothetical protein LOC100260045	-	6e-33	At1g53860	remorin family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1612260_at	CD798513	hypothetical protein LOC100266294	-	3e-30	At4g32690	GLB3	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	6e-6	52	Arabidopsis thaliana	At1g07290	837240	nucleotide-sugar transmembrane transporter	F:nucleotide-sugar transmembrane transporter activity;P:biological_process unknown;C:cellular_component unknown;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.45094.1.S1_at	BG041163	-	-	2e+0	At5g02750	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	2e-1	36	Hordeum vulgare	Contig17190_at	Contig17190	-	-	5e+0	At5g59870	HTA6	C.G.	S.X.	Please select
0.06	5e-8	59	Oryza sativa	Os03g0826300	9631.m06022	-	-	4e-2	At2g13650	GONST1 (Golgi Nucleotide Sugar Transporter 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	6e-22	105	Populus trichocarpa	PtpAffx.204918.1.S1_at	pmrna9724	hypothetical protein	-	6e-19	At1g07290	nucleotide-sugar transmembrane transporter	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e-1	36	Triticum aestivum	Ta.28490.1.A1_s_at	BQ162795	-	-	2e+0	At3g06730	thioredoxin family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.17308.1.A1_at	CF625691	-	-	2e+0	At1g64350	SEH1H	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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