Gene omics information

Query gene ID	1609046_at
Gene name	hypothetical protein LOC100256085
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1609046_at	CB971729	hypothetical protein LOC100256085	-	1e-13	At2g45650	AGL6 (AGAMOUS-LIKE 6)	S.X.	H.G.	Please select
0.04	5.2	1612269_at	CB345885	hypothetical protein LOC100259377	-	2e-12	At4g33000	CBL10 (CALCINEURIN B-LIKE 10)	S.X.	H.G.	Please select
0.02	3.2	1614727_at	CF203545.1	-	-	5e-13	At1g36050	unknown protein	S.X.	H.G.	Please select
0.00	0.5	1608850_s_at	BQ800000	hypothetical protein LOC100262029	-	1e+0	At5g44690	unknown protein	S.X.	H.G.	Please select
0.00	0.5	1618223_at	CF609799	hypothetical protein LOC100252225	-	2e-24	At4g31080	unknown protein	S.X.	H.G.	Please select
0.00	0.5	1610026_at	CF514136	-	-	2e-25	At4g31600	UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
80.3	100.0	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
7.1	99.1	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.5	98.4	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.1	98.1	GSM287892	Pink soft berry C11 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.7	97.7	GSM436366	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM436387	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.0	96.7	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.0	96.7	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM436385	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	2e-28	125	1612606_at	AF373602.1	MADS-box protein 3	-	7e-31	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please select
0.07	9e-9	59	1615428_at	AF373601.1	MADS-box protein 2	-	2e-40	At5g15800	SEP1 (SEPALLATA1)	C.G.	S.X.	Please select
0.06	1e-7	56	1614965_at	BQ792730	MADS-box protein 4	-	6e-36	At1g24260	SEP3 (SEPALLATA3)	C.G.	S.X.	Please select
0.04	5e-7	54	1621420_at	AY275713.1	FUL-like protein	-	5e-38	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select
0.08	8e-6	50	1613748_at	CD797578	AP1-like protein	-	4e-17	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please select
0.03	5e-4	44	1620932_at	CA817618	hypothetical protein LOC100259549	-	8e-28	At5g26980	SYP41 (SYNTAXIN OF PLANTS 41)	C.G.	S.X.	Please select
0.02	1e-1	36	1613815_at	BQ793122	hypothetical protein LOC100259564	-	2e-3	At1g48130	ATPER1	C.G.	S.X.	Please select
0.02	1e-1	36	1613468_at	CF405048	hypothetical protein LOC100250231	-	3e-55	At3g04730	IAA16	C.G.	S.X.	Please select
0.03	1e-1	36	1610797_at	CF413916	-	-	6e-2	At3g15440	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	1e-13	77	Arabidopsis thaliana	At2g45650	819173	AGL6 (AGAMOUS-LIKE 6)	sequence suggests this encodes a MADS-box transcription factor	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	2e-16	87	Glycine max	GmaAffx.45324.1.S1_at	AW459045	-	-	1e-13	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please select
0.11	4e-15	81	Hordeum vulgare	Contig2200_s_at	Contig2200	-	-	2e-3	At2g45650	AGL6 (AGAMOUS-LIKE 6)	C.G.	S.X.	Please select
0.11	9e-4	46	Oryza sativa	Os.49760.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	3e-9	63	Populus trichocarpa	PtpAffx.213045.1.S1_at	pmrna25528	hypothetical protein	-	5e-24	At2g45650	AGL6 (AGAMOUS-LIKE 6)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.15	2e-12	73	Triticum aestivum	Ta.14469.2.A1_a_at	CD374109	MADS-box transcription factor TaAGL16	-	2e-5	At3g61120	AGL13 (AGAMOUS-LIKE 13)	C.G.	S.X.	Please select
0.12	9e-22	103	Zea mays	Zm.292.1.S1_at	L46397.1	MADS box protein	-	2e-7	At3g61120	AGL13 (AGAMOUS-LIKE 13)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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