Gene omics information

Query gene ID	1608907_s_at
Gene name	hypothetical protein LOC100260266
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1608907_s_at	CA809004	hypothetical protein LOC100260266	-	1e-30	At1g60470	AtGolS4 (Arabidopsis thaliana galactinol synthase 4)	S.X.	H.G.	Please select
0.67	87.9	1617035_s_at	CF205538.1	hypothetical protein LOC100260266	-	1e-10	At2g47180	AtGolS1 (Arabidopsis thaliana galactinol synthase 1)	S.X.	H.G.	Please select
0.59	80.6	1616248_at	CF203724.1	-	-	5e+0	At3g47430	PEX11B	S.X.	H.G.	Please select
0.50	72.7	1619733_at	CB342943	hypothetical protein LOC100243866	-	1e-7	At2g15020	unknown protein	S.X.	H.G.	Please select
0.46	66.5	1607468_at	CA809097	hypothetical protein LOC100261598	-	1e+0	At5g59160	TOPP2	S.X.	H.G.	Please select
0.18	19.4	1610691_at	CF211470	hypothetical protein LOC100250451	-	1e-6	At5g55570	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.0	99.9	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
13.9	99.8	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
12.5	99.8	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
11.7	99.7	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
11.2	99.7	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
10.5	99.7	GSM147707	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	36
9.3	99.6	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
8.6	99.5	GSM147689	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	18
8.4	99.4	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
8.2	99.4	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	1e-172	605	1617035_s_at	CF205538.1	hypothetical protein LOC100260266	-	1e-10	At2g47180	AtGolS1 (Arabidopsis thaliana galactinol synthase 1)	C.G.	S.X.	Please select
0.19	5e-61	234	1616372_at	CA810743	-	-	3e+0	At1g53930	ubiquitin family protein	C.G.	S.X.	Please select
0.05	5e-27	121	1622722_at	CF209124	-	-	4e-1	At4g30067	LCR63 (Low-molecular-weight cysteine-rich 63)	C.G.	S.X.	Please select
0.05	5e-27	121	1618583_s_at	CF607489	-	-	6e+0	At5g64900	PROPEP1	C.G.	S.X.	Please select
0.04	5e-27	121	1613587_at	CF213486	hypothetical protein LOC100259893	-	1e-33	At5g57330	aldose 1-epimerase family protein	C.G.	S.X.	Please select
0.05	5e-27	121	1611432_at	BM437627	hypothetical protein LOC100265313	-	3e-5	At5g54490	PBP1 (PINOID-BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.05	5e-27	121	1607580_s_at	AF501624.1	similar to histone H3 /// similar to histone H3	-	6e-87	At4g40040	histone H3.2	C.G.	S.X.	Please select
0.04	1e-24	113	1616533_at	CB339497	hypothetical protein LOC100250997	-	6e-7	At4g32260	ATP synthase family	C.G.	S.X.	Please select
0.04	5e-21	101	1610144_at	CB342508	-	-	7e+0	At3g10815	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	1e-30	135	Arabidopsis thaliana	At1g60470	842342	AtGolS4 (Arabidopsis thaliana galactinol synthase 4)	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	1e-21	105	Glycine max	Gma.5637.1.S1_at	AY126715.1	galactinol synthase	-	4e-24	At2g47180	AtGolS1 (Arabidopsis thaliana galactinol synthase 1)	C.G.	S.X.	Please select
0.26	3e-14	79	Hordeum vulgare	Contig3812_at	Contig3812	-	-	2e-19	At1g09350	AtGolS3 (Arabidopsis thaliana galactinol synthase 3)	C.G.	S.X.	Please select
0.16	8e-18	93	Oryza sativa	Os03g0316200	AK071812.1	-	WSI76 protein induced by water stress	2e-22	At1g56600	AtGolS2 (Arabidopsis thaliana galactinol synthase 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.54	4e-173	609	Populus trichocarpa	Ptp.953.1.A1_x_at	CV236809	hypothetical protein	-	1e-48	At1g60470	AtGolS4 (Arabidopsis thaliana galactinol synthase 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.22	2e-13	77	Triticum aestivum	TaAffx.17365.1.S1_at	CK206695	-	-	1e-14	At1g56600	AtGolS2 (Arabidopsis thaliana galactinol synthase 2)	C.G.	S.X.	Please select
0.16	4e-7	56	Zea mays	Zm.12202.1.A1_at	BG549493	Galactinol synthase 1	-	3e-5	At1g09350	AtGolS3 (Arabidopsis thaliana galactinol synthase 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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