Gene omics information

Query gene ID	1608903_at
Gene name	hypothetical protein LOC100245579
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1608903_at	CF516993	hypothetical protein LOC100245579	-	9e-10	At3g14100	oligouridylate-binding protein, putative	S.X.	H.G.	Please select
0.61	83.2	1615460_at	CF405945	hypothetical protein LOC100249750	-	2e-91	At1g06700	serine/threonine protein kinase, putative	S.X.	H.G.	Please select
0.60	81.9	1619845_at	CB918038	hypothetical protein LOC100252548	-	4e-19	At4g33530	KUP5	S.X.	H.G.	Please select
0.55	77.3	1616072_at	CB980955	hypothetical protein LOC100267955	-	3e-5	At1g09290	unknown protein	S.X.	H.G.	Please select
0.36	50.7	1622597_at	CF212895	hypothetical protein LOC100244242	-	1e-4	At3g43520	unknown protein	S.X.	H.G.	Please select
0.28	37.7	1616109_at	CB348358	hypothetical protein LOC100243947	-	1e-7	At5g25080	-	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.1	94.6	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM287871	Green hard berry C4 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM287879	Green hard berry C19 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	1e-9	63	1617624_at	CB970729	hypothetical protein LOC100260069	-	4e-11	At1g17370	UBP1B (oligouridylate binding protein 1B)	C.G.	S.X.	Please select
0.02	2e-1	36	1613803_at	CF215845	similar to Na+/H+ antiporter	-	1e+0	At5g51180	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	1611866_at	CF513347	hypothetical protein LOC100246501	-	6e-12	At3g53460	CP29	C.G.	S.X.	Please select
0.01	1e+0	34	1610149_at	CD711459	hypothetical protein LOC100267843	-	2e-3	At1g27760	interferon-related developmental regulator family protein / IFRD protein family	C.G.	S.X.	Please select
0.01	1e+0	34	1608601_at	BQ800518	hypothetical protein LOC100262653	-	6e-20	At1g76150	maoC-like dehydratase domain-containing protein	C.G.	S.X.	Please select
0.01	1e+0	34	1607465_at	CD797253	-	-	2e-3	At5g13080	WRKY75	C.G.	S.X.	Please select
0.01	1e+0	34	1607293_at	CB344125	-	-	6e+0	At4g17390	60S ribosomal protein L15 (RPL15B)	C.G.	S.X.	Please select
0.01	4e+0	32	1622623_at	CF514619	hypothetical protein LOC100258799	-	1e+0	At1g64680	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	1620689_at	CF202169.1	-	-	1e+1	At4g24975	self-incompatibility protein-related	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	9e-10	65	Arabidopsis thaliana	At3g14100	820626	oligouridylate-binding protein, putative	F:mRNA 3'-UTR binding;P:unknown;C:unknown;MPFOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.30	1e-55	218	Glycine max	Gma.7065.1.S1_at	BQ297832	-	-	1e-7	At1g54080	oligouridylate-binding protein, putative	C.G.	S.X.	Please select
0.15	3e-23	109	Hordeum vulgare	Contig4468_at	Contig4468	-	-	2e-5	At1g17370	UBP1B (oligouridylate binding protein 1B)	C.G.	S.X.	Please select
0.14	1e-7	59	Oryza sativa	Os08g0520300	AK069912.1	-	RNA-binding region RNP-1 (RNA recognition motif)domain containing protein	1e-9	At1g17370	UBP1B (oligouridylate binding protein 1B)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.41	5e-89	329	Populus trichocarpa	PtpAffx.11687.1.A1_at	CV242439	-	-	3e-8	At3g14100	oligouridylate-binding protein, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	7e-20	99	Triticum aestivum	Ta.14245.1.S1_a_at	BQ839089	-	-	4e-12	At1g54080	oligouridylate-binding protein, putative	C.G.	S.X.	Please select
0.13	2e-9	63	Zea mays	Zm.14280.1.S1_at	AY103766.1	mRNA 3-UTR binding protein	-	2e-4	At1g17370	UBP1B (oligouridylate binding protein 1B)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage