Gene omics information

Query gene ID	1608892_at
Gene name	hypothetical protein LOC100243312
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.93	99.2	1608892_at	CF373801	hypothetical protein LOC100243312	-	3e-4	At3g45140	LOX2 (LIPOXYGENASE 2)	S.X.	H.G.	Please select
0.78	92.6	1617444_s_at	CF373801	hypothetical protein LOC100243312	-	3e-4	At3g45140	LOX2 (LIPOXYGENASE 2)	S.X.	H.G.	Please select
0.48	68.8	1606521_at	CF371891	hypothetical protein LOC100256590	-	5e-1	At4g37140	MEE69 (MATERNAL EFFECT EMBRYO ARREST 69)	S.X.	H.G.	Please select
0.35	48.5	1613399_at	CF208828	hypothetical protein LOC100254049	-	3e-3	At5g42860	unknown protein	S.X.	H.G.	Please select
0.27	34.0	1620930_s_at	CF212327	hypothetical protein LOC100249678	-	1e-150	At3g46440	UXS5	S.X.	H.G.	Please select
0.25	30.5	1607241_at	CB980618	hypothetical protein LOC100264706	-	7e-21	At2g35060	KUP11	S.X.	H.G.	Please select
0.24	28.7	1622019_s_at	CF204368.1	hypothetical protein LOC100243312	-	2e-1	At5g39950	ATTRX2 (THIOREDOXIN 2)	S.X.	H.G.	Please select
0.23	27.5	1622645_at	CF208259	hypothetical protein LOC100245405	-	1e-83	At1g01050	AtPPa1 (Arabidopsis thaliana pyrophosphorylase 1)	S.X.	H.G.	Please select
0.22	25.6	1612176_at	CF212948	hypothetical protein LOC100250907	-	5e-23	At3g17940	aldose 1-epimerase family protein	S.X.	H.G.	Please select
0.22	25.6	1612747_at	BQ800570	similar to ceramide glucosyltransferase	-	1e+0	At2g19880	ceramide glucosyltransferase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.9	97.9	GSM287892	Pink soft berry C11 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.6	97.6	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.5	97.5	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.3	97.2	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.2	97.1	GSM287896	Pink soft berry C27 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.0	96.7	GSM436410	V. riparia (VR, PI588259) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.8	96.4	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.8	96.4	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.8	96.4	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.94	0	2795	1617444_s_at	CF373801	hypothetical protein LOC100243312	-	3e-4	At3g45140	LOX2 (LIPOXYGENASE 2)	C.G.	S.X.	Please select
0.26	3e-168	591	1622019_s_at	CF204368.1	hypothetical protein LOC100243312	-	2e-1	At5g39950	ATTRX2 (THIOREDOXIN 2)	C.G.	S.X.	Please select
0.30	6e-92	337	1620945_at	CF568893	-	-	2e-1	At3g45140	LOX2 (LIPOXYGENASE 2)	C.G.	S.X.	Please select
0.01	1e+0	34	1618545_a_at	CB346750	hypothetical LOC100265979	-	2e-50	At1g12270	stress-inducible protein, putative	C.G.	S.X.	Please select
0.01	1e+0	34	1616231_s_at	CB970587	hypothetical protein LOC100243340	-	1e-19	At4g25740	40S ribosomal protein S10 (RPS10A)	C.G.	S.X.	Please select
0.01	1e+0	34	1614552_at	CB978862	hypothetical protein LOC100243178	-	3e-30	At3g61610	aldose 1-epimerase family protein	C.G.	S.X.	Please select
0.02	1e+0	34	1613941_at	CA818531	hypothetical protein LOC100251097	-	2e+0	At1g65390	ATPP2-A5 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2 A5)	C.G.	S.X.	Please select
0.01	1e+0	34	1613154_at	CB346750	hypothetical LOC100265979	-	2e-50	At1g12270	stress-inducible protein, putative	C.G.	S.X.	Please select
0.01	1e+0	34	1607952_at	CF372631	hypothetical protein LOC100250523	-	3e-8	At1g28440	HSL1 (HAESA-Like 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e-4	48	Arabidopsis thaliana	At3g45140	823650	LOX2 (LIPOXYGENASE 2)	Chloroplast lipoxygenase required for wound-induced jasmonic acid accumulation in Arabidopsis.Mutants are resistant to Staphylococcus aureus and accumulate salicylic acid upon infection.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	3e-20	101	Glycine max	Gma.9399.1.S1_at	CD390357	-	-	6e-4	At3g45140	LOX2 (LIPOXYGENASE 2)	C.G.	S.X.	Please select
0.03	2e+0	34	Hordeum vulgare	HVSMEg0005M23r2_at	HVSMEg0005M23r2	-	-	2e-1	At3g57730	protein kinase, putative	C.G.	S.X.	Please select
0.01	2e+0	36	Oryza sativa	OsAffx.23389.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.20	5e-28	127	Populus trichocarpa	PtpAffx.213797.1.S1_at	pmrna26930	hypothetical protein	-	4e-4	At3g45140	LOX2 (LIPOXYGENASE 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.01	7e-2	40	Triticum aestivum	Ta.1047.2.S1_a_at	BJ238886	-	-	4e+0	At2g21030	-	C.G.	S.X.	Please select
0.01	2e+0	34	Zea mays	Zm.5876.1.A1_at	AI657475	hypothetical protein LOC100216797	-	1e+0	At5g24520	TTG1 (TRANSPARENT TESTA GLABRA 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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