Gene omics information

Query gene ID	1608869_s_at
Gene name	glyceraldehyde-3-phosphate dehydrogenase
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.33	45.7	1608869_s_at	CF514065	glyceraldehyde-3-phosphate dehydrogenase	-	4e-41	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	S.X.	H.G.	Please select
0.73	90.8	1610845_at	CF208629	hypothetical protein LOC100245365	-	2e+0	At1g68030	PHD finger protein-related	S.X.	H.G.	Please select
0.67	87.9	1606542_at	BQ797856	hypothetical protein LOC100250325	-	1e+0	At2g10450	14-3-3 protein, putative / grf15, putative	S.X.	H.G.	Please select
0.67	87.9	1614871_s_at	CF404051	hypothetical protein LOC100266189	-	7e-5	At4g32551	LUG (LEUNIG)	S.X.	H.G.	Please select
0.50	72.7	1617329_at	BQ798056	hypothetical protein LOC100255368	-	5e-49	At3g19760	eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative	S.X.	H.G.	Please select
0.50	72.7	1606671_at	CA809598	hypothetical protein LOC100262399	-	3e-21	At4g31580	SRZ-22	S.X.	H.G.	Please select
0.42	60.1	1622462_at	CB916510	hypothetical protein LOC100265163	-	4e-23	At2g14740	ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.0	88.2	GSM436423	V. riparia (VR, PI588259) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436408	V. riparia (VR, PI588259) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436416	V. riparia (VR, PI588259) SD, 13h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436422	V. riparia (VR, PI588259) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM436405	V. riparia (VR, PI588259) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	2e-59	228	1615814_at	CB920915	hypothetical protein LOC100264789	-	0	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	C.G.	S.X.	Please select
0.02	5e-7	54	1622715_s_at	CA809281	hypothetical protein LOC100246378	-	3e-68	At1g12900	GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2)	C.G.	S.X.	Please select
0.03	5e-7	54	1617428_at	CB344473	hypothetical protein LOC100259814	-	7e-57	At1g42970	GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT)	C.G.	S.X.	Please select
0.05	3e-2	38	1618095_at	CF210792	-	-	1e-82	At1g16300	GAPCP-2	C.G.	S.X.	Please select
0.03	5e-1	34	1612355_at	CD010675	-	-	2e-15	At3g05090	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.02	5e-1	34	1609503_at	CF404599	hypothetical protein LOC100267009	-	3e-1	At5g11970	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1617347_at	CB982365	hypothetical protein LOC100257949	-	7e-18	At3g05810	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1617438_at	CF405183	-	-	9e-1	At4g21500	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1614677_at	CF405759	-	-	6e-2	At3g25640	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	4e-41	169	Arabidopsis thaliana	At3g04120	819567	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	encodes cytosolic GADPH (C subunit) involved in the glycolytic pathway but also interacts with H2O2 potentially placing it in a signalling cascade induced by ROS.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.31	9e-37	155	Glycine max	Gma.17053.3.S1_at	CA783832	Cultivar JS385 glyceraldehyde 3-phosphate dehydrogenase	-	3e-45	At1g13440	GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)	C.G.	S.X.	Please select
0.23	4e-15	81	Hordeum vulgare	HZ48K22r_s_at	HZ48K22r	glyceraldehyde-3-phosphate dehydrogenase	-	3e-13	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	C.G.	S.X.	Please select
0.25	8e-41	169	Oryza sativa	Os02g0601300	AK099086.1	-	-	1e-166	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.34	4e-45	182	Populus trichocarpa	PtpAffx.18295.2.A1_s_at	CV253912	hypothetical protein	-	2e-61	At1g13440	GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	1e-25	117	Triticum aestivum	Ta.24991.1.S1_x_at	CK214927	cytosolic glyceraldehyde-3-phosphate dehydrogenase GAPDH	-	4e-120	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	C.G.	S.X.	Please select
0.11	1e-23	109	Zea mays	Zm.2601.1.S1_at	U45856.1	cytosolic glyceroldehyde-3-phosphate dehydrogenase GAPC3 /// glyceraldehyde-3-phosphate dehydrogenase	-	3e-139	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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