CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1608829_at

Gene name hypothetical protein LOC100258592

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.9 1608829_at CD802477 hypothetical protein LOC100258592 - 9e-24 At4g03415 catalytic/ protein serine/threonine phosphatase S.X. H.G.
0.59 80.6 1622185_at CF209948 - - 3e-2 At1g78915 binding S.X. H.G.
0.53 75.2 1613373_at BM437091 hypothetical protein LOC100245626 - 5e-7 At3g25500 AFH1 (FORMIN HOMOLOGY 1) S.X. H.G.
0.50 72.7 1609302_at CB979609 similar to somatic embryogenesis receptor kinase - 7e-14 At1g34210 SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2) S.X. H.G.
0.40 57.7 1609490_s_at CK138152.1 hypothetical protein LOC100267319 - 6e-9 At4g24760 unknown protein S.X. H.G.
0.33 45.7 1614917_at CF372079 hypothetical protein LOC100267340 - 4e+0 At5g60660 PIP2 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.8 97.8 GSM436412 V. riparia (VR, PI588259) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.8 96.4 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.8 96.4 GSM436410 V. riparia (VR, PI588259) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.6 96.0 GSM436400 V. riparia (VR, PI588259) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.6 96.0 GSM436402 V. riparia (VR, PI588259) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.4 95.5 GSM436401 V. riparia (VR, PI588259) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.3 95.2 GSM436399 V. riparia (VR, PI588259) LD, 15h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM436403 V. riparia (VR, PI588259) LD, 15h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM436404 V. riparia (VR, PI588259) LD, 15h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM436405 V. riparia (VR, PI588259) LD, 15h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-1 34 1611599_at BQ797186 hypothetical protein LOC100250312 - 1e-1 At1g78190 unknown protein C.G. S.X.
0.03 5e-1 34 1607856_at CB342234 - - 1e+0 At4g23680 major latex protein-related / MLP-related C.G. S.X.
0.02 2e+0 32 1621857_at CK136931.1 - - 9e-2 At5g51940 NRPB6A C.G. S.X.
0.02 2e+0 32 1621296_at CF208996 hypothetical protein LOC100243802 - 3e-7 At1g06870 signal peptidase, putative C.G. S.X.
0.02 2e+0 32 1620298_at CF513792 hypothetical protein LOC100253937 - 1e-18 At1g47270 AtTLP6 (TUBBY LIKE PROTEIN 6) C.G. S.X.
0.02 2e+0 32 1620244_at CD720153 - - 2e-136 Atcg01250 - C.G. S.X.
0.02 2e+0 32 1618885_at CB339428 - - 4e+0 At4g19630 heat shock factor protein-related / heat shock transcription factor-related C.G. S.X.
0.03 2e+0 32 1618482_x_at CF203697.1 - - 2e+0 At5g50370 adenylate kinase, putative C.G. S.X.
0.03 2e+0 32 1611239_at CF203697.1 - - 2e+0 At5g50370 adenylate kinase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 9e-24 111 Arabidopsis thaliana At4g03415 827930 catalytic/ protein serine/threonine phosphatase F:protein serine/threonine phosphatase activity, catalytic activity;P:unknown;C:plasma membrane;PMOFV - - - C.G. S.X.
0.28 3e-67 256 Glycine max GmaAffx.1378.1.S1_s_at BM093364 - - 1e-8 At4g03415 catalytic/ protein serine/threonine phosphatase C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HW04E04u_at HW04E04u - - 1e+0 At4g14272 - C.G. S.X.
0.07 6e-11 69 Oryza sativa Os07g0566200 NM_186350.1 - Protein phosphatase 2C-like domain containingprotein 3e-3 At4g03415 catalytic/ protein serine/threonine phosphatase C.G. S.X.
0.25 8e-68 258 Populus trichocarpa PtpAffx.17575.1.S1_at CV281808 hypothetical protein - 3e-52 At1g03590 catalytic/ protein serine/threonine phosphatase C.G. S.X.
0.03 7e+0 32 Triticum aestivum TaAffx.112464.1.S1_at CA623716 - - 3e+0 At4g16930 disease resistance protein (TIR-NBS-LRR class), putative C.G. S.X.
0.06 3e-3 42 Zea mays Zm.11923.1.S1_at BM381883 hypothetical protein LOC100191414 - 6e-1 At4g03415 catalytic/ protein serine/threonine phosphatase C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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