Gene omics information

Query gene ID	1608777_at
Gene name	hypothetical protein LOC100266496
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	81.9	1608777_at	CB344861	hypothetical protein LOC100266496	-	6e-19	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	S.X.	H.G.	Please select
0.86	95.1	1615234_at	CB342968	hypothetical protein LOC100258729	-	3e-17	At1g54350	ABC transporter family protein	S.X.	H.G.	Please select
0.71	89.5	1612484_at	CF510569	hypothetical protein LOC100254359 /// hypothetical protein LOC100267643	-	7e-8	At5g10470	kinesin motor protein-related	S.X.	H.G.	Please select
0.71	89.5	1620190_at	CA817971	hypothetical protein LOC100267159	-	1e-16	At5g13720	-	S.X.	H.G.	Please select
0.55	77.3	1607125_at	CB342111	hypothetical protein LOC100242557	-	8e-2	At5g26820	ATIREG3 (IRON-REGULATED PROTEIN 3)	S.X.	H.G.	Please select
0.50	72.7	1611274_at	CF208296	hypothetical protein LOC100247974	-	3e-71	At5g58330	malate dehydrogenase (NADP), chloroplast, putative	S.X.	H.G.	Please select
0.42	60.1	1611605_s_at	CF371905	hypothetical protein LOC100257686	-	2e-3	At2g31050	plastocyanin-like domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.8	96.4	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.6	96.0	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
3.6	96.0	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.6	96.0	GSM147730	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	59
3.4	95.5	GSM147695	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	24
3.3	95.2	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.3	95.2	GSM147694	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation	23
3.3	95.2	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.2	94.9	GSM147676	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	5
3.2	94.9	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	6e-44	176	1615216_at	CB005624	hypothetical protein LOC100240861	-	6e-34	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	C.G.	S.X.	Please select
0.02	6e-1	34	1619134_at	CB971759	-	-	2e+0	At5g53720	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.02	6e-1	34	1617006_at	CF514282	hypothetical protein LOC100255735	-	6e-10	At4g33350	chloroplast inner membrane import protein Tic22, putative	C.G.	S.X.	Please select
0.01	6e-1	34	1613735_at	CF209024	hypothetical protein LOC100264792	-	4e-64	At2g32730	26S proteasome regulatory subunit, putative	C.G.	S.X.	Please select
0.01	6e-1	34	1613421_at	CD711287	hypothetical protein LOC100261079	-	2e-4	At4g32400	SHS1 (SODIUM HYPERSENSITIVE 1)	C.G.	S.X.	Please select
0.02	2e+0	32	1621642_at	CF516142	hypothetical protein LOC100267838	-	1e-22	At4g08170	inositol 1,3,4-trisphosphate 5/6-kinase family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1620872_at	CF207634	hypothetical protein LOC100264096	-	4e-1	At1g10240	FRS11 (FAR1-related sequence 11)	C.G.	S.X.	Please select
0.02	2e+0	32	1618905_at	CB339532	hypothetical protein LOC100245830	-	5e-7	At2g25670	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1618950_at	CD718527	-	-	9e-2	At2g01350	QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	6e-19	95	Arabidopsis thaliana	At3g63410	825516	APG1 (ALBINO OR PALE GREEN MUTANT 1)	Encodes a MPBQ/MSBQ methyltransferase located in the chloroplast inner envelope membrane. Mutant plants lack plastoquinone (PQ), suggesting that the APG1 protein is involved in the methylation step of PQ biosynthesis. The gene product is also involved in tocopherol (vitamin E) biosynthesis.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.39	2e-65	250	Glycine max	GmaAffx.727.1.S1_at	BE804565	-	-	2e-61	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	C.G.	S.X.	Please select
0.12	4e-6	52	Hordeum vulgare	Contig2893_at	Contig2893	-	-	4e-30	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	C.G.	S.X.	Please select
0.20	8e-23	109	Oryza sativa	Os07g0179300	9635.m00769	-	UbiE/COQ5 methyltransferase family protein	3e-18	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.29	4e-39	163	Populus trichocarpa	PtpAffx.22220.2.A1_s_at	DN485688	hypothetical protein	-	4e-7	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.13	2e-9	63	Triticum aestivum	Ta.28670.1.S1_at	CA625828	-	-	4e-33	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	C.G.	S.X.	Please select
0.11	2e-10	65	Zea mays	Zm.2855.1.A1_at	BM351276	inner envelope membrane protein	-	6e-23	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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