Gene omics information

Query gene ID	1608708_at
Gene name	hypothetical protein LOC100255983
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	80.6	1608708_at	CF211873	hypothetical protein LOC100255983	-	2e-9	At4g29680	type I phosphodiesterase/nucleotide pyrophosphatase family protein	S.X.	H.G.	Please select
0.71	89.5	1608277_at	CA816391	hypothetical protein LOC100249980	-	3e-75	At4g12230	esterase/lipase/thioesterase family protein	S.X.	H.G.	Please select
0.64	84.7	1606778_at	CF607072	hypothetical protein LOC100261953	-	6e-30	At3g56740	ubiquitin-associated (UBA)/TS-N domain-containing protein	S.X.	H.G.	Please select
0.63	84.3	1610578_at	BG273711	hypothetical protein LOC100247027	-	1e-13	At3g53110	LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4)	S.X.	H.G.	Please select
0.44	64.1	1622000_s_at	CF604800	hypothetical protein LOC100242169	-	1e+0	At3g27329	-	S.X.	H.G.	Please select
0.43	61.5	1622567_at	CF516028	hypothetical protein LOC100266603	-	2e-20	At5g27490	integral membrane Yip1 family protein	S.X.	H.G.	Please select
0.42	60.1	1613321_at	CF516415	hypothetical protein LOC100244395	-	5e-49	At5g55070	2-oxoacid dehydrogenase family protein	S.X.	H.G.	Please select
0.33	45.7	1607136_at	CF605014	hypothetical protein LOC100257366	-	4e-28	At4g38630	RPN10 (REGULATORY PARTICLE NON-ATPASE 10)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.7	96.2	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9	93.8	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.8	93.4	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.8	93.4	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6	92.5	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-2	38	1610633_at	BM438112	-	-	8e-2	At3g21890	zinc finger (B-box type) family protein	C.G.	S.X.	Please select
0.02	1e-1	36	1617920_at	CF609275	hypothetical protein LOC100251815	-	7e-40	At5g49720	ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)	C.G.	S.X.	Please select
0.02	2e+0	32	1622589_s_at	CF517250	hypothetical protein LOC100261125	-	7e-3	At5g19590	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	1621688_at	CF415096	hypothetical protein LOC100261754	-	8e-10	At5g41080	glycerophosphoryl diester phosphodiesterase family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1621644_at	CB004591	-	-	3e-9	At3g23690	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.03	2e+0	32	1621107_at	CF516489	-	-	1e+0	At1g22030	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1618922_at	CF517250	-	-	7e-3	At5g19590	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	1618018_at	CF403362	hypothetical protein LOC100257171	-	4e+0	At4g21570	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	1617898_at	CF605263	hypothetical protein LOC100244372	-	3e-1	At5g49610	F-box family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	2e-9	63	Arabidopsis thaliana	At4g29680	829089	type I phosphodiesterase/nucleotide pyrophosphatase family protein	F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:vacuole;MBOFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	36	Glycine max	PsAffx.C78000080_at	PsAffx.C78000080	-	-	7e-2	At3g48020	-	C.G.	S.X.	Please select
0.04	7e-1	34	Hordeum vulgare	Contig25274_at	Contig25274	-	-	3e+0	At3g17609	HYH (HY5-HOMOLOG)	C.G.	S.X.	Please select
Os03g0172500	0	Os08g0560100	Oryza sativa	Os01g0369800	9631.m03785	-	-	7e+0	At2g46540	unknown protein	C.G.	S.X.	Please select
0.07	1e-4	48	Populus trichocarpa	PtpAffx.109015.1.S1_at	AJ776323	hypothetical protein	-	1e-20	At4g29680	type I phosphodiesterase/nucleotide pyrophosphatase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	9e-2	38	Triticum aestivum	TaAffx.79915.1.S1_at	CA706091	-	-	3e+0	At4g32260	ATP synthase family	C.G.	S.X.	Please select
0.03	6e-1	34	Zea mays	Zm.6849.1.A1_at	AI065467	hypothetical protein LOC100275227	-	4e+0	At5g01380	transcription factor	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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