CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1608691_at

Gene name hypothetical protein LOC100248623

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 93.6 1608691_at CB345817 hypothetical protein LOC100248623 - 6e-27 At1g78630 emb1473 (embryo defective 1473) S.X. H.G.
0.91 98.8 1616390_at CF211469 hypothetical protein LOC100248042 - 1e-41 At3g13120 30S ribosomal protein S10, chloroplast, putative S.X. H.G.
0.83 94.6 1621569_at CD801894 hypothetical protein LOC100257626 - 4e-7 At3g27850 RPL12-C (ribosomal protein l12-c) S.X. H.G.
0.77 92.3 1614138_at CA815957 hypothetical protein LOC100254839 - 3e-14 At1g68590 plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative S.X. H.G.
0.67 87.9 1620854_at CA818411 hypothetical protein LOC100258321 - 7e-12 At1g29070 ribosomal protein L34 family protein S.X. H.G.
0.50 72.7 1622193_at CF208331 hypothetical protein LOC100265325 - 2e-35 At5g30510 RPS1 (RIBOSOMAL PROTEIN S1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.0 98.7 GSM147687 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 16
5.3 98.2 GSM147675 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 4
5.1 98.1 GSM147726 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 55
4.6 97.6 GSM147678 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 7
4.5 97.5 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
4.4 97.3 GSM147692 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation 21
4.4 97.3 GSM147693 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 22
4.3 97.2 GSM147705 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 34
4.0 96.7 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70
4.0 96.7 GSM147686 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 15
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 2e-91 333 1613645_at CF201766.1 hypothetical protein LOC100248623 - 7e-55 At1g78630 emb1473 (embryo defective 1473) C.G. S.X.
0.11 4e-25 113 1622348_s_at CB342797 hypothetical protein LOC100248623 - 1e-34 At1g78630 emb1473 (embryo defective 1473) C.G. S.X.
0.02 8e-2 36 1619779_at CA816807 hypothetical LOC100247281 - 4e-5 At1g57620 emp24/gp25L/p24 family protein C.G. S.X.
0.03 1e+0 32 1615254_at CB349010 hypothetical protein LOC100257612 - 6e-6 At4g32470 ubiquinol-cytochrome C reductase complex 14 kDa protein, putative C.G. S.X.
0.02 1e+0 32 1609722_a_at CF213782 similar to ribosomal protein L17 - 1e-66 At1g04480 60S ribosomal protein L23 (RPL23A) C.G. S.X.
0.03 1e+0 32 1608732_at CB973045 - - 5e+0 At4g18500 unknown protein C.G. S.X.
0.02 5e+0 30 1622047_at CB968668 hypothetical protein LOC100256407 - 3e-8 At1g75960 AMP-binding protein, putative C.G. S.X.
0.02 5e+0 30 1621069_at CD008619 - - 5e+0 At5g48175 unknown protein C.G. S.X.
0.02 5e+0 30 1618635_at CB341972 - - 2e+0 At5g45770 AtRLP55 (Receptor Like Protein 55) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 6e-27 121 Arabidopsis thaliana At1g78630 844199 emb1473 (embryo defective 1473) F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:thylakoid, ribosome, chloroplast, chloroplast stroma;BOMFAP - - - C.G. S.X.
0.27 2e-33 143 Glycine max Gma.1389.1.S1_at CD407055 - - 4e-48 At1g78630 emb1473 (embryo defective 1473) C.G. S.X.
0.14 2e-6 52 Hordeum vulgare Contig6936_at Contig6936 - - 2e+0 At4g22950 AGL19 (AGAMOUS-LIKE 19) C.G. S.X.
0.13 2e-13 77 Oryza sativa Os01g0749200 AK104146.1 - 50S ribosomal protein L13 1e-20 At1g78630 emb1473 (embryo defective 1473) C.G. S.X.
0.44 6e-40 165 Populus trichocarpa PtpAffx.14466.2.S1_at BU862601 - - 7e-42 At1g78630 emb1473 (embryo defective 1473) C.G. S.X.
0.08 3e-7 56 Triticum aestivum Ta.2076.1.S1_at CK215984 - - 2e-7 At1g78630 emb1473 (embryo defective 1473) C.G. S.X.
0.09 2e-6 52 Zea mays Zm.6588.1.A1_at BM080221 hypothetical protein LOC100192010 - 5e-23 At1g78630 emb1473 (embryo defective 1473) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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