Gene omics information

Query gene ID	1608603_at
Gene name	hypothetical LOC100242108
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1608603_at	BQ795705	hypothetical LOC100242108	-	3e-13	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	S.X.	H.G.	Please select
0.44	64.1	1609100_s_at	CF205280.1	-	-	4e+0	At5g06910	ATJ6 (Arabidopsis J-domain protein 6)	S.X.	H.G.	Please select
0.40	57.7	1610752_at	CF209288	hypothetical protein LOC100246682	-	1e-17	At3g18030	ATHAL3A	S.X.	H.G.	Please select
0.39	54.9	1607757_at	CF373709	-	-	1e-3	At1g80670	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.35	48.5	1614452_at	BQ798156	-	-	6e-3	At2g05900	SDG11 (SET DOMAIN-CONTAINING PROTEIN 11)	S.X.	H.G.	Please select
0.35	48.5	1613377_at	CB910700	hypothetical protein LOC100243326	-	4e+0	At3g09350	armadillo/beta-catenin repeat family protein	S.X.	H.G.	Please select
0.34	46.8	1621430_at	BQ795297	hypothetical protein LOC100249442	-	2e-30	At5g18940	Mo25 family protein	S.X.	H.G.	Please select
0.26	32.0	1613421_at	CD711287	hypothetical protein LOC100261079	-	2e-4	At4g32400	SHS1 (SODIUM HYPERSENSITIVE 1)	S.X.	H.G.	Please select
0.26	32.0	1612852_at	CB976927	hypothetical protein LOC100243284	-	5e-76	At5g62890	permease, putative	S.X.	H.G.	Please select
0.24	28.7	1622171_at	CB975783	hypothetical protein LOC100244384	-	6e-28	At5g60670	60S ribosomal protein L12 (RPL12C)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.9	98.6	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
5.0	98.0	GSM436378	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
5.0	98.0	GSM436377	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.5	97.5	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM436352	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.3	97.2	GSM436376	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.3	97.2	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.3	97.2	GSM436353	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	3e-23	107	1615753_at	CF207576	-	-	2e-11	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	C.G.	S.X.	Please select
0.12	1e-22	105	1612281_at	CF208454	hypothetical protein LOC100260786	-	8e-13	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	C.G.	S.X.	Please select
0.08	4e-19	93	1621563_x_at	AF239740.1	similar to caffeic acid O-methyltransferase	-	1e-39	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	C.G.	S.X.	Please select
0.08	4e-19	93	1616434_s_at	AF239740.1	hypothetical protein LOC100258977 /// caffeic acid O-methyltransferase /// similar to caffeic acid O-methyltransferase	-	1e-39	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	C.G.	S.X.	Please select
0.08	4e-19	93	1612124_at	AF239740.1	similar to caffeic acid O-methyltransferase	-	1e-39	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	C.G.	S.X.	Please select
0.12	1e-16	85	1619682_x_at	CF205002.1	-	-	3e-45	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	C.G.	S.X.	Please select
0.09	2e-12	71	1619450_s_at	CF215109	hypothetical protein LOC100258977	-	6e-63	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	C.G.	S.X.	Please select
0.04	8e-2	36	1620342_at	CF207053.1	O-methyltransferase-like	-	3e-5	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	C.G.	S.X.	Please select
0.02	8e-2	36	1610458_at	CA815967	hypothetical protein LOC100257623	-	2e+0	At5g05420	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	3e-13	75	Arabidopsis thaliana	At5g54160	835504	ATOMT1 (O-METHYLTRANSFERASE 1)	A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay. AtOMT1 (At5g54160) encodes a flavonol 3’-O-methyltransferase that is highly active towards quercetin and myricetin. The substrate specificity identifies the enzyme as flavonol 3’-methyltransferase which replaces the former annotation of the gene to encode a caffeic acid/5-hydroxyferulic acid O-methyltransferase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.19	8e-21	101	Glycine max	Gma.6550.3.S1_s_at	AW234450	-	-	1e-33	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	C.G.	S.X.	Please select
0.08	9e-9	59	Hordeum vulgare	Contig2535_s_at	Contig2535	-	-	3e-1	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	C.G.	S.X.	Please select
0.03	5e-1	36	Oryza sativa	Os12g0199500	9640.m00915	-	-	3e+0	At3g47920	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	3e-5	50	Populus trichocarpa	PtpAffx.57723.1.S1_s_at	AJ774023	caffeic acid 3-O-methyltransferase	-	2e-39	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	3e-1	36	Triticum aestivum	Ta.4350.1.A1_at	CA644429	Flavonoid O-methyltransferase	-	2e+1	At4g08867	unknown protein	C.G.	S.X.	Please select
0.04	8e-3	40	Zea mays	Zm.2681.1.A1_at	BM073609	-	-	5e+0	At5g42990	UBC18 (ubiquitin-conjugating enzyme 18)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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