CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1608593_at

Gene name hypothetical protein LOC100254837

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.93 99.2 1608593_at CB981729 hypothetical protein LOC100254837 - 1e+0 At2g27340 - S.X. H.G.
0.25 30.5 1610014_at CF405435 hypothetical protein LOC100265580 - 2e+0 At2g36620 RPL24A (ribosomal protein L24) S.X. H.G.
0.20 22.4 1622187_at CF516794 hypothetical protein LOC100262936 - 4e-119 At3g18190 chaperonin, putative S.X. H.G.
0.14 14.4 1606856_at CF516128 hypothetical protein LOC100250494 - 7e-27 At5g46630 clathrin adaptor complexes medium subunit family protein S.X. H.G.
0.11 11.3 1613245_s_at CD802128 similar to 60S ribosomal protein L11 (RPL11B) - 7e-108 At3g58700 60S ribosomal protein L11 (RPL11B) S.X. H.G.
0.09 9.4 1614608_at CF212155 similar to protein transport protein Sec24, putative - 4e-10 At3g07100 protein transport protein Sec24, putative S.X. H.G.
0.09 9.4 1610625_at CD802063 hypothetical protein LOC100259247 - 6e-30 At4g08960 phosphotyrosyl phosphatase activator (PTPA) family protein S.X. H.G.
0.04 5.2 1622788_at CB920325 hypothetical protein LOC100262286 - 1e-1 At3g15355 UBC25 (UBIQUITIN-CONJUGATING ENZYME 25) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.0 98.0 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.1 96.9 GSM436355 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM436420 V. riparia (VR, PI588259) SD, 13h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM436357 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM436373 Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM436419 V. riparia (VR, PI588259) SD, 13h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM436374 Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM287866 Green hard berry B21 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.8 93.4 GSM287889 Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.6 92.5 GSM436377 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 32 1622621_at CD010679 - - 5e+0 At4g30070 LCR59 (Low-molecular-weight cysteine-rich 59) C.G. S.X.
0.02 1e+0 32 1620284_at CA817004 hypothetical protein LOC100249470 - 1e-17 At4g35220 cyclase family protein C.G. S.X.
0.03 1e+0 32 1618366_a_at CF208481 - - 1e+0 At4g13440 calcium-binding EF hand family protein C.G. S.X.
0.03 1e+0 32 1609951_at CD010679 - - 5e+0 At4g30070 LCR59 (Low-molecular-weight cysteine-rich 59) C.G. S.X.
0.03 5e+0 30 1621901_at CF211826 hypothetical protein LOC100260405 - 3e-2 At1g58170 disease resistance-responsive protein-related / dirigent protein-related C.G. S.X.
0.03 5e+0 30 1621898_s_at CF518253 - - 6e+0 At4g00950 MEE47 (maternal effect embryo arrest 47) C.G. S.X.
0.03 5e+0 30 1621679_at CB003331 similar to Os11g0657300 - 4e-22 At2g14285 - C.G. S.X.
0.02 5e+0 30 1620919_at CB343034 hypothetical protein LOC100258879 - 3e-30 At4g03280 PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C) C.G. S.X.
0.02 5e+0 30 1620892_at CD720178 - - 1e+0 At1g66060 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At2g27340 817277 - F:molecular_function unknown;P:biological_process unknown;C:unknown;FMOBP - - - C.G. S.X.
0.20 5e-16 85 Glycine max GmaAffx.92345.1.S1_s_at CF808070 - - 9e-45 At3g50590 nucleotide binding C.G. S.X.
0.03 8e+0 30 Hordeum vulgare HA24G18r_at HA24G18r - - 3e+0 At4g25560 AtMYB18 (myb domain protein 18) C.G. S.X.
0.09 2e-9 63 Oryza sativa Os09g0408000 AK059658.1 - Conserved hypothetical protein 2e-11 At3g50590 nucleotide binding C.G. S.X.
0.22 6e-31 135 Populus trichocarpa Ptp.6322.2.A1_a_at CV241840 - - 4e-1 At1g61810 BGLU45 (BETA-GLUCOSIDASE 45) C.G. S.X.
0.04 3e-1 36 Triticum aestivum Ta.6698.2.S1_a_at CA682866 - - 4e+0 At4g31150 endonuclease V family protein C.G. S.X.
0.04 7e+0 30 Zea mays Zm.5180.1.A1_at AI612313 - - 1e+1 At5g27090 AGL54 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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