Gene omics information

Query gene ID	1608585_x_at
Gene name	proline-rich cell wall protein-like
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1608585_x_at	BQ797013	proline-rich cell wall protein-like	-	7e-7	At3g07910	-	S.X.	H.G.	Please select
0.91	98.8	1617556_s_at	BQ797260	proline-rich cell wall protein-like /// hypothetical protein LOC100245999	-	3e-2	At1g76930	ATEXT4 (EXTENSIN 4)	S.X.	H.G.	Please select
0.91	98.8	1621251_s_at	BQ795002	hypothetical protein LOC100265471	-	2e+1	Atmg00500	-	S.X.	H.G.	Please select
0.83	94.6	1618595_at	BQ798258	hypothetical protein LOC100248440	-	5e-1	At4g10950	GDSL-motif lipase/hydrolase family protein	S.X.	H.G.	Please select
0.83	94.6	1615212_at	CF406027	ripening-related protein-like	-	8e+0	At5g64040	PSAN	S.X.	H.G.	Please select
0.67	87.9	1610418_at	BQ798078	hypothetical protein LOC100245385	-	8e-13	At1g20190	ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.3	99.8	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
11.0	99.7	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
11.0	99.7	GSM287892	Pink soft berry C11 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
10.9	99.7	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
10.2	99.6	GSM287896	Pink soft berry C27 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
10.1	99.6	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
10.0	99.6	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
9.5	99.6	GSM287890	Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
8.7	99.5	GSM287881	Green soft berry B10 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
8.6	99.5	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.74	0	1285	1617556_s_at	BQ797260	proline-rich cell wall protein-like /// hypothetical protein LOC100245999	-	3e-2	At1g76930	ATEXT4 (EXTENSIN 4)	C.G.	S.X.	Please select
0.24	3e-117	420	1610524_s_at	CD798339	similar to HSC70-1 (heat shock cognate 70 kDa protein 1); ATP binding	-	1e-52	At3g12580	HSP70 (heat shock protein 70)	C.G.	S.X.	Please select
0.16	2e-100	365	1606825_s_at	CB981133	-	-	8e+0	At3g32905	unknown protein	C.G.	S.X.	Please select
0.32	9e-90	329	1619004_at	BQ795665	-	-	2e+1	At5g18040	unknown protein	C.G.	S.X.	Please select
0.02	1e-5	50	1620222_x_at	AJ237984.1	proline-rich cell wall protein-like /// ripening-induced protein 1-like	-	6e-1	Atcg00360	-	C.G.	S.X.	Please select
0.02	1e-5	50	1615067_s_at	AJ237984.1	proline-rich cell wall protein-like /// ripening-induced protein 1-like	-	6e-1	Atcg00360	-	C.G.	S.X.	Please select
0.02	1e-5	50	1609846_a_at	AJ237984.1	proline-rich cell wall protein-like /// ripening-induced protein 1-like	-	6e-1	Atcg00360	-	C.G.	S.X.	Please select
0.03	2e-4	46	1621384_at	AY046417.1	proline rich protein 2	-	2e+0	Atmg01250	-	C.G.	S.X.	Please select
0.03	2e-4	46	1616045_a_at	AJ237983.1	proline-rich cell wall protein-like	-	2e+0	At3g47180	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	7e-7	56	Arabidopsis thaliana	At3g07910	819982	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	8e-26	119	Glycine max	Gma.9659.1.S1_at	AW349623	-	-	6e+0	At5g07700	MYB76 (myb domain protein 76)	C.G.	S.X.	Please select
0.12	8e-2	38	Hordeum vulgare	Contig8748_at	Contig8748	-	-	5e+0	At2g16740	UBC29 (ubiquitin-conjugating enzyme 29)	C.G.	S.X.	Please select
0.17	6e-18	93	Oryza sativa	Os.20506.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.20	5e-30	133	Populus trichocarpa	PtpAffx.92521.1.S1_at	CA928526	hypothetical protein	-	5e-3	At3g07910	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	2e-1	38	Triticum aestivum	Ta.5296.2.S1_at	CA695476	-	-	1e+0	At2g25295	LCR81 (Low-molecular-weight cysteine-rich 81)	C.G.	S.X.	Please select
0.02	7e-2	38	Zea mays	Zm.8373.1.S1_at	BM073875	-	-	1e+0	At1g72640	binding / catalytic	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage